Difference between revisions of "Part:BBa K2656007"
 
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We have also calculated the relative force between the different promoters, taking [https://parts.igem.org/Part:BBa_K2656005 BBa_K2656005 promoter] as a reference.  Likewise, the promoter ratio (p parameter ratio) for the different promoters referring to the stronger one (reference) has been calculated.  
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We have also calculated the relative force between the different promoters, taking [https://parts.igem.org/Part:BBa_K2656005 BBa_K2656005 promoter] as a reference.  Likewise, the promoter ratio (p parameter ratio) of the different promoters referring to the stronger one has been calculated.  
  
 
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Latest revision as of 01:19, 18 October 2018

Constitutive promoter J23101

domestication.
Figure 1. DNA basic parts domestication. First construction refers to promoter domestication into the Golden Gate grammar.

Part BBa_K2656007 is the constitutive strong promoter BBa_J23101 adapted into the Golden Gate grammar. Thus, it is compatible with both Biobrick and [http://2018.igem.org/Team:Valencia_UPV/Design Golden Braid] assembly methods.

Following the Golden Gate assembly protocol , it can be combined with other GB compatible parts from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Valencia UPV IGEM 2018 Printeria Collection] to assemble transcriptional units in a BsaI Type IIS one-pot reaction.

Characterization of the this part was performed with the transcriptional unit BBa_K2656107, which was used in a comparative promoters expression experiment with composite parts BBa_K2656105 and BBa_K2656107. They all were assembled in a Golden Braid alpha1 plasmid using the same RBS, CDS and terminator:

  • RBS BBa_K2656009: the B0030 RBS in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]
  • CDS BBa_K2656022: the E0040 GFPmut3b sequence in its Golden Braid standardized version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]
  • Terminator BBa_K2656026: the B0015 transcriptional terminator in its Golden Braid compatible version from our [http://2018.igem.org/Team:Valencia_UPV/Part_Collection Part Collection]

By using this [http://2018.igem.org/Team:Valencia_UPV/Experiments#exp_protocol experimental protocol], we have obtained the parameters to valide our [http://2018.igem.org/Team:Valencia_UPV/Modeling#models constitutive model] and so rationale choose its optimized values based on each promoter tested.

promoter experiment.
Figure 2. Promoter expression experiment with BBa_K2656004, K2656005 and BBa_K2656007 basic pieces


Table 1. Optimized parameters for the BBa_K2656007 promoter.
Parameter Value
Constitutive transcription rate CR CR = 486.25 min-1
Dilution rate μ μ = 0.0058 min-1

We have also calculated the relative force between the different promoters, taking BBa_K2656005 promoter as a reference. Likewise, the promoter ratio (p parameter ratio) of the different promoters referring to the stronger one has been calculated.

Table 2. BBa_K2656007 relative strength and p ratio.
Parameter Value
Relative strength 0.9367
p parameter ratio 0.9013


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 11
    Illegal NheI site found at 34
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]