Difference between revisions of "Part:BBa K2557011"

 
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The TetO sequence, SV40 NLS, flag tag, EF1α promoter, and Bxb1 recombinase are ligated in sequence, and participate in intracellular signal processing.According to the feedback of the digital model, the different strength promoters upstream of the recombinase and the recombination efficiency of the recombinase will affect the stability of the system. Therefore, in order to optimize our system, we used three promoters and three recombinases, hoping to find the optimal solution.
 
The TetO sequence, SV40 NLS, flag tag, EF1α promoter, and Bxb1 recombinase are ligated in sequence, and participate in intracellular signal processing.According to the feedback of the digital model, the different strength promoters upstream of the recombinase and the recombination efficiency of the recombinase will affect the stability of the system. Therefore, in order to optimize our system, we used three promoters and three recombinases, hoping to find the optimal solution.
  
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===Usage and Biology===
 
  
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=== Sequence and Features===
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<html>
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<img src="https://static.igem.org/mediawiki/parts/3/37/T--NAU-China--tetO-recombinase.png"width="300"/>
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</html>
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===Usage and Biology=== 
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This composite part can transduce the input signal of the upstream TEV protease into the expression of Bxb1, which can turn on the expression of RFP. Here, we characterized the combination of the EF1α promoter and Bxb1.
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===Characterization===
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<html>
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<img src="https://static.igem.org/mediawiki/parts/c/ca/T--NAU-CHINA-sanzhang_lvse.jpg"width="400"/>
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</html>
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Fig. 1 Fluorescence microscope observation of HEK 293T only transfect with plasmids containing promoters with tetO sequence.
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Fig. 1 shows that the strength of the three promoters in HEK 293T cells is from strong to weak: Ubc > EF1 α > miniCMV.
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<html>
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<img src="https://static.igem.org/mediawiki/parts/4/42/T--NAU-CHINA-teto_ef1a_bxb1.jpg"width="400"/>
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</html>
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Fig. 2 Fluorescence microscope observation of HEK 293T after transfecting with different plasmid combination.
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Fig. 2 shows that the flipping effect of EF1α-Bxb1 is better than that of miniCMV-Bxb1, which is consistent with the strength of their promoter indicated by Fig. 1.
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===References===
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1.Blechl, A., Lin, J., Shao, M., Thilmony, R. & Thomson, J. The Bxb1 Recombinase Mediates Site-Specific Deletion in Transgenic Wheat. Plant Mol. Biol. Report. 30, 1357–1366 (2012).
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2.Rutherford, K. & Van Duyne, G. D. The ins and outs of serine integrase site-specific recombination. Curr. Opin. Struct. Biol. 24, 125–131 (2014).
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3. Ramos, J. L. et al. The TetR Family of Transcriptional Repressors The TetR Family of Transcriptional Repressors. Microbiol. Mol. Biol. Rev. 69, 326–356 (2005).
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K2557011 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2557011 SequenceAndFeatures</partinfo>

Latest revision as of 18:46, 17 October 2018


TetO-EF1α promoter-Bxb1

The TetO sequence, SV40 NLS, flag tag, EF1α promoter, and Bxb1 recombinase are ligated in sequence, and participate in intracellular signal processing.According to the feedback of the digital model, the different strength promoters upstream of the recombinase and the recombination efficiency of the recombinase will affect the stability of the system. Therefore, in order to optimize our system, we used three promoters and three recombinases, hoping to find the optimal solution.


Sequence and Features

Usage and Biology

This composite part can transduce the input signal of the upstream TEV protease into the expression of Bxb1, which can turn on the expression of RFP. Here, we characterized the combination of the EF1α promoter and Bxb1.

Characterization

Fig. 1 Fluorescence microscope observation of HEK 293T only transfect with plasmids containing promoters with tetO sequence.

Fig. 1 shows that the strength of the three promoters in HEK 293T cells is from strong to weak: Ubc > EF1 α > miniCMV.

Fig. 2 Fluorescence microscope observation of HEK 293T after transfecting with different plasmid combination.

Fig. 2 shows that the flipping effect of EF1α-Bxb1 is better than that of miniCMV-Bxb1, which is consistent with the strength of their promoter indicated by Fig. 1.

References

1.Blechl, A., Lin, J., Shao, M., Thilmony, R. & Thomson, J. The Bxb1 Recombinase Mediates Site-Specific Deletion in Transgenic Wheat. Plant Mol. Biol. Report. 30, 1357–1366 (2012).

2.Rutherford, K. & Van Duyne, G. D. The ins and outs of serine integrase site-specific recombination. Curr. Opin. Struct. Biol. 24, 125–131 (2014).

3. Ramos, J. L. et al. The TetR Family of Transcriptional Repressors The TetR Family of Transcriptional Repressors. Microbiol. Mol. Biol. Rev. 69, 326–356 (2005).

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal XbaI site found at 565
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1279
    Illegal BamHI site found at 499
    Illegal BamHI site found at 720
    Illegal BamHI site found at 1036
    Illegal BamHI site found at 1744
    Illegal BamHI site found at 2035
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal XbaI site found at 565
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal XbaI site found at 565
    Illegal NgoMIV site found at 1021
    Illegal AgeI site found at 505
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 741