Difference between revisions of "Part:BBa K2762003"

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<partinfo>BBa_K2762003 short</partinfo>
 
<partinfo>BBa_K2762003 short</partinfo>
  
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===Usage and Biology===
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===Background===
 
This part encodes for phosphoribulokinase (PRK) (EC 2.7.1.19), an enzyme involved in the Calvin-Benson-Bassham (CBB) cycle that catalyzes the conversion of ribulose-5-phosphate (Ru5P) to ribulose-1,5-biphosphate (RuBP).
 
This part encodes for phosphoribulokinase (PRK) (EC 2.7.1.19), an enzyme involved in the Calvin-Benson-Bassham (CBB) cycle that catalyzes the conversion of ribulose-5-phosphate (Ru5P) to ribulose-1,5-biphosphate (RuBP).
  
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==Characterization==
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===Expression in <i>E. coli</i>===
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[[File:T--NCKU Tainan--part BBa K2762003.jpg|200px|centre]]
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[[File:T--NCKU Tainan--part BBa K2762003.png|200px|centre]]
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===SDS-PAGE of PRK===
 
===SDS-PAGE of PRK===
 
To find out whether the gene <i>prk</i> is successfully expressed in <i>E. coli</i>, we conducted a SDS-PAGE test. The cells were harvested by centrifuging at 10,000×g for 10 min., and then washed with deionized water for 2 times. The cell density was adjusted to an O.D.600 of 5 as the sample of whole cell (WC, whole cell catalyst).
 
To find out whether the gene <i>prk</i> is successfully expressed in <i>E. coli</i>, we conducted a SDS-PAGE test. The cells were harvested by centrifuging at 10,000×g for 10 min., and then washed with deionized water for 2 times. The cell density was adjusted to an O.D.600 of 5 as the sample of whole cell (WC, whole cell catalyst).
 
Finally, WC was analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with 10% separating gel and 4% stacking gel. Proteins were visualized by staining with Coomassie blue R-250 and were scanned with an Image scanner.
 
Finally, WC was analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with 10% separating gel and 4% stacking gel. Proteins were visualized by staining with Coomassie blue R-250 and were scanned with an Image scanner.
 
The result is shown below.
 
The result is shown below.
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[[File:T--NCKU Tainan--part BBa K2762007 final .png|500px|centre]]
  
 
===PRK Toxicity Test===
 
===PRK Toxicity Test===
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<partinfo>BBa_K2762003 parameters</partinfo>
 
<partinfo>BBa_K2762003 parameters</partinfo>
 
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===Source===
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Codon oprimized <i>Synechococcus elongatus</i> PCC7942.
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====Reference====
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Fuyu Gong, Guoxia Liu, Xiaoyun Zhai,Jie Zhou, Zhen Cai and Yin Li .(2015,Jun 18). Quantitative analysis of an engineered CO<sub>2</sub>-fixing Escherichia coli reveals great potential of heterotrophic CO<sub>2</sub> fixation.<i> Biotechnology for Biofuels.</i>

Latest revision as of 14:18, 17 October 2018


Phosphoribulokinase (prk)

Background

This part encodes for phosphoribulokinase (PRK) (EC 2.7.1.19), an enzyme involved in the Calvin-Benson-Bassham (CBB) cycle that catalyzes the conversion of ribulose-5-phosphate (Ru5P) to ribulose-1,5-biphosphate (RuBP).

Expression in E. coli

T--NCKU Tainan--part BBa K2762003.png

SDS-PAGE of PRK

To find out whether the gene prk is successfully expressed in E. coli, we conducted a SDS-PAGE test. The cells were harvested by centrifuging at 10,000×g for 10 min., and then washed with deionized water for 2 times. The cell density was adjusted to an O.D.600 of 5 as the sample of whole cell (WC, whole cell catalyst). Finally, WC was analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with 10% separating gel and 4% stacking gel. Proteins were visualized by staining with Coomassie blue R-250 and were scanned with an Image scanner. The result is shown below.

T--NCKU Tainan--part BBa K2762007 final .png

PRK Toxicity Test

RuBP produced from the PRK catalyzed reaction cannot be metabolized by E. coli and the accumulation of RuBP in E. coli would cause cell growth arrest. To examine the relationship between the expression of PRK in E. coli and its growth, we carried out an experiment to measure the growth of E. coli strain DH5α with and without plasmid carrying prk gene, each in separate glucose and xylose M9 mediums after a 12-hour incubation.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Source

Codon oprimized Synechococcus elongatus PCC7942.

Reference

Fuyu Gong, Guoxia Liu, Xiaoyun Zhai,Jie Zhou, Zhen Cai and Yin Li .(2015,Jun 18). Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation. Biotechnology for Biofuels.