Difference between revisions of "Part:BBa K2629003"

 
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
  
−
__NOTOC__
+
<html>
−
<partinfo>BBa_K2629003 short</partinfo>
+
<h2> Pseudomonas aeruginosa (Pyo) detector part - it activation allows the detection of 42bp of Pyo GyrA gene. </h2>
  
−
This year, the goal of our team is to develop a fully automated system capable of :
 
−
&#8594; identifying Pseudomonas aeruginosa
 
−
&#8594; detecting resistance markers
 
−
&#8594; select the right phages for a possible phagotherapy
 
  
−
To do this, we will use a DNA probe: a plasmid with a one-stranded fraction which is complementary to the sequence we want to detect (target).
+
<center><table>
 +
<caption> <h3>Pyo detector part : <h3> </caption>
 +
<tr><th>Biobrick name :</th><td><center>BBa_K2629001</center></td></tr>
 +
<tr><th>RFC Compatibility :</th><td><center>RFC [10]; RFC [21]; RFC [23]; RFC [25]</center></td></tr>
 +
<tr><th>Backbones :</th><td><center>pSB1C3</center></td></tr>
 +
<tr><th>Submitted by :</th><td><center>iGEM Grenoble Alpes 2018 team</center></td></tr>
 +
</table></center>
  
−
The target is a 42bp sequence found in Pyo GyrA gene. It encodes for the DNA gyrase subunit A (topoisomerase II). This chosen target is flanked with FspI and RsaI restriction sites, so its digestion is necessary to free the target fragment with correct length.
 
  
−
For our proof of concept, we worked on a pathogenic bacterial usually found in nosocomial infection cases due to its ability to develop antibiotic resistance : Pseudomonas Aeruginosa (Pyo), PAO1 strain.
 
−
Here, is the description of the probe that characterize the lyse of Pyo which can detect a small fragment of its DNA. To do so, a plasmid containing the probe can be digestion with four specific restriction enzymes (cohesive and nicking enzymes) in order  to create a single-stranded window. The feature is that the single-strand part will be specific of the target that we want to detect, this enable the recircularization of the plasmid.
 
  
−
For this part, the detector is inserted in psB1C3-BBa_J04450 was replacce by BBa_K592100 allowing the emission of blue fluorescence. Finally, the goal is to detect fluorescence in our automated system.
+
<p><p> This year, the goal of our team is to develop a fully automated system capable of :
 +
<p> &#8594; identifying Pseudomonas aeruginosa
 +
<p> &#8594; detecting resistance markers
 +
<p> &#8594; select the right phages for a possible phage therapy
  
 +
<p> To do this, we will use a DNA probe: a plasmid with a one-stranded fraction which is complementary to the sequence we want to detect (target).
 +
 +
 +
 +
 +
<p> The target is a 42bp sequence found in Pyo GyrA gene. It encodes for the DNA gyrase subunit A (topoisomerase II).
 +
<p> This chosen target is flanked with Rsa1 and Fsp1 restrictions sites, so its digestion is necessary to free the target fragment with correct length.
 +
 +
<p> For our proof of concept, we worked on a pathogenic bacterial usually found in nosocomial infection cases due to its ability to develop antibiotic resistance : Pseudomonas Aeruginosa (Pyo), PAO1 strain.
 +
<p> Here, is the description of the probe, that characterize one restistance marker of Pyo, which can detect a small fragment of its DNA. To do so, a plasmid containg the probe can be digestion with four specific restriction enzymes (cohesive and nicking enzymes) in order  to create a single-stranded window. The feature is that the single-strand part will be specific of the target that we want to detect, this enable the recircularization of the plasmid.
 +
 +
<p> For this part, the detector is inserted in psB1C3-BBa_J04450 where BBa_J04450 was replaced by BBa_K592100 allowing the emission of red fluorescence. Finally, the goal is to detect fluorescence in our automated system.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 09:51, 9 October 2018

Pseudomonas aeruginosa (Pyo) detector part - it activation allows the detection of 42bp of Pyo GyrA gene.

Pyo detector part :

Biobrick name :
BBa_K2629001
RFC Compatibility :
RFC [10]; RFC [21]; RFC [23]; RFC [25]
Backbones :
pSB1C3
Submitted by :
iGEM Grenoble Alpes 2018 team

This year, the goal of our team is to develop a fully automated system capable of :

→ identifying Pseudomonas aeruginosa

→ detecting resistance markers

→ select the right phages for a possible phage therapy

To do this, we will use a DNA probe: a plasmid with a one-stranded fraction which is complementary to the sequence we want to detect (target).

The target is a 42bp sequence found in Pyo GyrA gene. It encodes for the DNA gyrase subunit A (topoisomerase II).

This chosen target is flanked with Rsa1 and Fsp1 restrictions sites, so its digestion is necessary to free the target fragment with correct length.

For our proof of concept, we worked on a pathogenic bacterial usually found in nosocomial infection cases due to its ability to develop antibiotic resistance : Pseudomonas Aeruginosa (Pyo), PAO1 strain.

Here, is the description of the probe, that characterize one restistance marker of Pyo, which can detect a small fragment of its DNA. To do so, a plasmid containg the probe can be digestion with four specific restriction enzymes (cohesive and nicking enzymes) in order to create a single-stranded window. The feature is that the single-strand part will be specific of the target that we want to detect, this enable the recircularization of the plasmid.

For this part, the detector is inserted in psB1C3-BBa_J04450 where BBa_J04450 was replaced by BBa_K592100 allowing the emission of red fluorescence. Finally, the goal is to detect fluorescence in our automated system. Sequence and Features BBa_K2629003 SequenceAndFeatures