Difference between revisions of "Part:BBa K2232020"
 
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===Usage and Biology===
 
===Usage and Biology===
  
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The gerA operon from Bacillus subtilis encodes the spore’s germinant receptor for L-alanine. Overexpression of the tricistronic gerA operon will increase markedly the rates of germination of Bacillus subtilis spores with L-alanine,in particular at low L-alanine concentrations.
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This part，PsspB-gerAa (BBa_K2232020)，consisting mainly of the PsspB promoter followed by the first 303bp of the gerA gene, plays the role as Responder in the germination of spores.
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The promoter for the B.subtilis sspB gene (PsspB) is more active than the endogenous gerAa promoter. It is also active during germination.
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The gerA from Bacillus subtilis encodes the spore’s germinant receptor for L-alanine. Overexpression of this gene will increase markedly the rate of germination of B. subtilis spores even at low L-alanine concentration.
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This device consists mainly of the sspB promoter followed by the first 303bp of the gerA operon (first 303bp of the gerAa gene). Since B.subtilis exhibits accurate and efficient homologous recombination, a single cross-over event between the gerAa region in the BioBrick and the endogenous gerA sequence inserts the sspB promoter upstream of the spoVA operon,which promote the germination of Bacillus subtilis.
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The promoter for the B.subtilis sspB gene (PsspB) is stronger than the endogenous gerA promoter, and only switch on the transcription after the initiation of sporulation.
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Since B.subtilis exhibits accurate and efficient homologous recombination, a single cross-over event between the gerAa region in the BioBrick and the endogenous gerA sequence inserts the PsspB promoter upstream of the gerA cds, which increases the germination rate of Bacillus subtilis endospores eventually.
  
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K2232020 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2232020 SequenceAndFeatures</partinfo>
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===iGEM2017 SZU-China===
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The part was synthesized and insert into the expression vector by restriction sites BamHI and HindIII（Fig.1）, and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/b/b1/GerAa1.png' style="width:60%;margin:0 auto">
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<center>Fig.1 Construction of the expression vector_PsspB-gerAa. The Rep_B and Kan represents replicon of B.subtilis and kanamycin resistance marker. The part PsspB-gerAa was inserted by the restriction site BamHI at 4151 bp and HindIII at 4652 bp.</center>
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</html></center>
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</div>
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We transformed the expression vectors into Bacillus subtilis WB800 by optimization of Spizizen method, and the real positive clones was confirmed by kanamycin screening and nucleic acid electrophoresis (Fig.2).
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/c/cb/Gera2.png' style="width:25%;margin:0 auto">
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<center>Fig.2  1% Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 501 bp and 6393 bp respectively, which correspond to the length of PsspB-gerAa and the blank plasmid.
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Lane 1: Complete plasmid; Lane 2: Plasmid digested by BamHI and HindIII; Lane M: DL marker.
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</center>
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</html></center>
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</div>
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In order to test the germination rate of the B.subtilis endospores, we used the whole yeast solid plate (Fig.3) and the 2xSG liquid medium (Fig.4) to harvest the mature spores, The yield of spores can be calculate by phase contrast microscope using the Hemocytometer，which always reach 90% in 72h after cultivating（Fig.5）
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/c/ce/Gera3.png' style="width:40%;margin:0 auto">
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<center>Fig.3  The whole yeast solid plate. 
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</center>
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</html></center>
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</div>
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/2/26/GerA4.png' style="width:40%;margin:0 auto">
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<center>Fig.4  2xSG liquid medium.
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</center>
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</html></center>
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</div>
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/9/9e/Gera5.png' style="width:40%;margin:0 auto">
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<center>Fig.5  The endospores of B.subtilis observed under the phase contrast microscope. Sporation rate always reach 90% above in 72h after cultivating at the whole yeast solid plate and 2xSG liquid medium.
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</center>
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</html></center>
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</div>
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To verify the increases in the germination rates with L-alanine of spores transformed this part PsspB-gerAa (BBa_K2232020), both spores of original strain (control group) and transformed strain (gerAa group) were collected and detected the germination rates  induced by L-alanine(2mmol/L). Germination was monitored by reading the drop in
 +
absorbance (A600) in a 96-well microplate reader (Molecular Devices FlexStation 3).Theoretically, the earliest easily measured event in spore germination is the release of various ions, and Ca<sup>2+</sup>-DPA release is accompanied by the loss of 70% of the total amount of the OD600 that is lost upon spore germination. Consequently, measurement of the OD600 of germinating spores, in particular, the maximum rate of the fall of the OD600 at a given germinant concentration, is a simple and reliable method for quantitating and comparing rates of spore germination. As shown in Fig.6 and Fig.7, the gerAa group showed a higher proportion in germination and quicker rate in germination than the control group, which indicated the gerA play a good Responder in germination to L-analine in particular at low concentration. Therefore, gene gerAa is verified to be in good condition and can work efficiently as repected.
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/2/24/Fig.6a.png' style="width:40%;margin:0 auto">
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<center>Fig.6  Variation of values and rates of loss in OD600 during germination of spores with or without transformation of PsspB-gerAa. The results represent the average (SD) of three independent spore batches The drop rate of OD600 is proportional to the germination rate and the value of gerAa group is more than twice of control group with significant difference in statistics.
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</center>
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</html></center>
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</div>
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<div>
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<center><html><img src='https://static.igem.org/mediawiki/parts/6/65/Gera7.png' style="width:30%;margin:0 auto">
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<center>Fig.7  Variation of values and rates of loss in OD600 during germination of spores with or without transformation of PsspB-gerAa. The results represent the average (SD) of three independent spore batches The drop rate of OD600 is proportional to the germination rate and the value of gerAa group is more than twice of control group with significant difference in statistics.
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</center>
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</html></center>
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</div>
  
 
===References===
 
===References===

Latest revision as of 02:54, 2 November 2017

PsspB-gerAa

This part expresses in B.subsilis to increase the germinability of the spore.

Usage and Biology

This part，PsspB-gerAa (BBa_K2232020)，consisting mainly of the PsspB promoter followed by the first 303bp of the gerA gene, plays the role as Responder in the germination of spores. The gerA from Bacillus subtilis encodes the spore’s germinant receptor for L-alanine. Overexpression of this gene will increase markedly the rate of germination of B. subtilis spores even at low L-alanine concentration. The promoter for the B.subtilis sspB gene (PsspB) is stronger than the endogenous gerA promoter, and only switch on the transcription after the initiation of sporulation. Since B.subtilis exhibits accurate and efficient homologous recombination, a single cross-over event between the gerAa region in the BioBrick and the endogenous gerA sequence inserts the PsspB promoter upstream of the gerA cds, which increases the germination rate of Bacillus subtilis endospores eventually.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 7
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 94
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 409

iGEM2017 SZU-China

The part was synthesized and insert into the expression vector by restriction sites BamHI and HindIII（Fig.1）, and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.

Fig.1 Construction of the expression vector_PsspB-gerAa. The Rep_B and Kan represents replicon of B.subtilis and kanamycin resistance marker. The part PsspB-gerAa was inserted by the restriction site BamHI at 4151 bp and HindIII at 4652 bp.

We transformed the expression vectors into Bacillus subtilis WB800 by optimization of Spizizen method, and the real positive clones was confirmed by kanamycin screening and nucleic acid electrophoresis (Fig.2).

Fig.2 1% Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 501 bp and 6393 bp respectively, which correspond to the length of PsspB-gerAa and the blank plasmid. Lane 1: Complete plasmid; Lane 2: Plasmid digested by BamHI and HindIII; Lane M: DL marker.

In order to test the germination rate of the B.subtilis endospores, we used the whole yeast solid plate (Fig.3) and the 2xSG liquid medium (Fig.4) to harvest the mature spores, The yield of spores can be calculate by phase contrast microscope using the Hemocytometer，which always reach 90% in 72h after cultivating（Fig.5）

Fig.3 The whole yeast solid plate.
Fig.4 2xSG liquid medium.
Fig.5 The endospores of B.subtilis observed under the phase contrast microscope. Sporation rate always reach 90% above in 72h after cultivating at the whole yeast solid plate and 2xSG liquid medium.

To verify the increases in the germination rates with L-alanine of spores transformed this part PsspB-gerAa (BBa_K2232020), both spores of original strain (control group) and transformed strain (gerAa group) were collected and detected the germination rates induced by L-alanine(2mmol/L). Germination was monitored by reading the drop in absorbance (A600) in a 96-well microplate reader (Molecular Devices FlexStation 3).Theoretically, the earliest easily measured event in spore germination is the release of various ions, and Ca2+-DPA release is accompanied by the loss of 70% of the total amount of the OD600 that is lost upon spore germination. Consequently, measurement of the OD600 of germinating spores, in particular, the maximum rate of the fall of the OD600 at a given germinant concentration, is a simple and reliable method for quantitating and comparing rates of spore germination. As shown in Fig.6 and Fig.7, the gerAa group showed a higher proportion in germination and quicker rate in germination than the control group, which indicated the gerA play a good Responder in germination to L-analine in particular at low concentration. Therefore, gene gerAa is verified to be in good condition and can work efficiently as repected.

Fig.6 Variation of values and rates of loss in OD600 during germination of spores with or without transformation of PsspB-gerAa. The results represent the average (SD) of three independent spore batches The drop rate of OD600 is proportional to the germination rate and the value of gerAa group is more than twice of control group with significant difference in statistics.
Fig.7 Variation of values and rates of loss in OD600 during germination of spores with or without transformation of PsspB-gerAa. The results represent the average (SD) of three independent spore batches The drop rate of OD600 is proportional to the germination rate and the value of gerAa group is more than twice of control group with significant difference in statistics.

References

  • This part created by 2017 SZU-China iGEM team basing on the original part: BBa_K911008