Difference between revisions of "Part:BBa K2448013:Design"
 
(2 intermediate revisions by one other user not shown)
Line 7: Line 7:
  
 
===Design Notes===
 
===Design Notes===
−
nucleotides 1114473 to 1114072 of Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1) with 2 modifications to remove a NcoI site and a PstI site
+
nucleotides 1114473 to 1114074 of Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1) with 2 modifications to remove a NcoI site and a PstI site to allow potential Golden Gate Assembly use and complementarity with the Universal Biosensing Chassis ([[Part:BBa_K2448023|BBa_K2448023]] and [[Part:BBa_K2448024|BBa_K2448024]]).
−
 
+
−
 
+
  
 
===Source===
 
===Source===
Line 16: Line 14:
  
 
===References===
 
===References===
 +
[1] [http://regprecise.lbl.gov/RegPrecise/regulon.jsp?regulon_id=50236 RegPrecise database]
 +
 +
[2] Solovyev V, Salamov A. Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, (2011) p. 61-78. [http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb BPROM webserver]

Latest revision as of 17:08, 15 July 2019


pPsiR from Sinorhizobium fredii


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 211
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

nucleotides 1114473 to 1114074 of Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1) with 2 modifications to remove a NcoI site and a PstI site to allow potential Golden Gate Assembly use and complementarity with the Universal Biosensing Chassis (BBa_K2448023 and BBa_K2448024).

Source

DNA synthesis

References

[1] [http://regprecise.lbl.gov/RegPrecise/regulon.jsp?regulon_id=50236 RegPrecise database]

[2] Solovyev V, Salamov A. Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, (2011) p. 61-78. [http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb BPROM webserver]