Difference between revisions of "Part:BBa K2368007"

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<h1>Introduction</h1>
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<p style="text-align: center"><partinfo>BBa_K2368007 short</partinfo></P>
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<p> This part consists of the promoter <i>Gal1/Gal10</i>, sweetness receptor T1R2 and the terminator <i>CYC1</i>. The promoter <i>Gal1/Gal10</i> is a bi-directional galactose-inducible promoter, which requires two percent of galactose to induce twelve hours to elicit protein expression. T1R2 is the sweetness receptor of the human tongue cells belonging to C type G protein coupled receptor.</P>
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[[File:HHRR-1.png|center|500px|默认文字]]
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<p style="text-align: center">Fig.1 The schematic diagram of P<sub>Gal1</sub>/P<sub>Gal10</sub>+T1R2+CYC1t</p>
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<h1>Experiments</h1>
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<h2>Part 1: Dry experiments of T1R2</h2>
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<h3>1、T1R2/T1R3 receptor activation part</h3>
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<p>The part is about the sweeteners binding to the receptor and the GPCR produce the initial signal through changing structure. For T1R2/T1R3, we divide the process of inducing signal into four conditions of T1R2/T1R3 as show in Fig.2. And the reaction between different conditions of protein is used ODEs to describe it. The all ODEs are shown follow. </p>
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[[File:T-BIT-China-2017niubi-1.jpeg|center|500px|默认文字]]
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<p style="text-align: center">Fig.2 T1R2/T1R3 receptor activation reaction diagram</p>
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[[File:HHRR-15.PNG|800px|默认文字]]
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<p>(T1R2/3: the T1R2/T1R3 heterodimer)</p>
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<p>The parameters of this part are listed in the Table 1.</p>
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<p>Table 1. The value of parameter in T1R2/T1R3 receptor activation part</p>
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[[File:HHRR-3.png|center|500px|默认文字]]
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<p>The output of the T1R2/T1R3 receptor activation part is showed. (Fig.3)</p>
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[[File:HHRR-4.png|center|500px|默认文字]]
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<p style="text-align: center">Fig. 3 The output signal, activated state of T1R2/T1R3, induced by different concentration ligand</p>
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<p>As we can see, the activated state of T1R2/T1R3 establishes clear distant under different concentration of ligand for binding. It can prove that this pathway can sense different strength of signal and the signal will decrease soon, which means our system will have less signal interfere.</p>
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<h3>2、The result of T1R2 expression </h3>
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<p>As the result of combination model established, we can see the curve of RFP intensity does not increase at first 5 hours, and then the RFP intensity increases rapidly among 5-15 hours. At the same time, the differences of each ligand concentration are displayed in the middle of culture time (around at 15 hours), which is similar to our experimental data. Finally, the RFP of all groups reduce slowly. </p>
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[[File:HHRR-5.png|center|500px|默认文字]]
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<p style="text-align: center">Fig. 4 The simulation result of RFP intensity in population level.</p>
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<h2>Part 2: Wet experiments of T1R2</h2>
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<h4>Design</h4>
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<p>We construct the part by Overlap Extension PCR. And the <i>Gal1/Gal10</i> promoter and the <i>CYC1</i> terminator stem from the PESC-Ura plasmid.</p>
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<h4>Result</h4>
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<p>In our experiment, the T1R2 gene is used to accept the signal inputted in our whole pathway. We synthesized this part by OE-PCR.</p>
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[[File:微信图片 20171026230752.png|center|500px|默认文字]]
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<p style="text-align: center">Fig.5 The electrophoresis of the positive result of T1R2.
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<p>Then the expression and location of the receptor are detected by immunofluorescence. The principle of immunofluorescence is that the antibody A binds to the tag, and then the fluorescent antibody B binds to the A. This is the positive result of our immunofluorescence.</p>
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[[File:HHRR-6.png|center|500px|默认文字]]
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<p style="text-align: center">Fig.6 Immunofluorescence of T1R2/T1R3 in yeast. The scale bars represent 10µm</p>
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<p>As the result of combination model established, we can see the curve of RFP intensity does not increase at first 5 hours, and then the RFP intensity increases rapidly among 5-15 hours. At the same time, the differences of each ligand concentration are displayed in the middle of culture time (around at 15 hours), which is similar to our experimental data. Finally, the RFP of all groups reduce slowly after 15 hours.</p>
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[[File:HHRR-7.png|center|500px|默认文字]]
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<p style="text-align: center">Fig. 7 The fluorescence intensity of different sweeteners</p>
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<p> [1] Morini G, Bassoli A, Temussi P A. Journal of Medicinal Chemistry, 2005, 48(17):5520-9.</p>
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<p>[2] Neumoin A, Cohen L S, Arshava B, et al. Biophysical Journal, 2009, 96(8):3187-3196.</p>
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<p>[3] Bohlmann L, Tredwell G D, Yu X, et al. Nature Chemical Biology, 2015, 11(12):955.</p>
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<p>[4] Dubois G E. Molecular mechanism of sweetness sensation.[J]. Physiology & Behavior, 2016, 164(Pt B):453.</p>
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<p>[5] Kofahl B, Klipp E. Modelling the dynamics of the yeast pheromone pathway.[J]. Yeast, 2004, 21(10):831.</p>
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<p>[6] Richardson, Kathryn. Mechanisms of GPCR signal regulation in fission yeast[J]. University of Warwick, 2014.</p>
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<p>[7] Nie Y, Vigues S, Hobbs J R, et al. Distinct contributions of T1R2 and T1R3 taste receptor subunits to the detection of sweet stimuli.[J]. Current Biology Cb, 2005, 15(21):1948-52.</p>
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<p>[8] Audet M, Bouvier M. Restructuring G-Protein- Coupled Receptor Activation[J]. Cell, 2012, 151(1):14-23.</p>
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<!-- Add more about the biology of this part here
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===Usage and Biology===
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<h2>Sequence and Features</h2>
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<partinfo>BBa_K2368007 SequenceAndFeatures</partinfo>
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<!-- Uncomment this to enable Functional Parameter display
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===Functional Parameters===
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<partinfo>BBa_K2368007 parameters</partinfo>
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Latest revision as of 15:20, 28 October 2017


Introduction

PGal 1/10-T1R2-CYC1t

This part consists of the promoter Gal1/Gal10, sweetness receptor T1R2 and the terminator CYC1. The promoter Gal1/Gal10 is a bi-directional galactose-inducible promoter, which requires two percent of galactose to induce twelve hours to elicit protein expression. T1R2 is the sweetness receptor of the human tongue cells belonging to C type G protein coupled receptor.

默认文字

Fig.1 The schematic diagram of PGal1/PGal10+T1R2+CYC1t

Experiments

Part 1: Dry experiments of T1R2

1、T1R2/T1R3 receptor activation part

The part is about the sweeteners binding to the receptor and the GPCR produce the initial signal through changing structure. For T1R2/T1R3, we divide the process of inducing signal into four conditions of T1R2/T1R3 as show in Fig.2. And the reaction between different conditions of protein is used ODEs to describe it. The all ODEs are shown follow.

默认文字

Fig.2 T1R2/T1R3 receptor activation reaction diagram

默认文字

(T1R2/3: the T1R2/T1R3 heterodimer)

The parameters of this part are listed in the Table 1.

Table 1. The value of parameter in T1R2/T1R3 receptor activation part

默认文字

The output of the T1R2/T1R3 receptor activation part is showed. (Fig.3)

默认文字

Fig. 3 The output signal, activated state of T1R2/T1R3, induced by different concentration ligand

As we can see, the activated state of T1R2/T1R3 establishes clear distant under different concentration of ligand for binding. It can prove that this pathway can sense different strength of signal and the signal will decrease soon, which means our system will have less signal interfere.

2、The result of T1R2 expression

As the result of combination model established, we can see the curve of RFP intensity does not increase at first 5 hours, and then the RFP intensity increases rapidly among 5-15 hours. At the same time, the differences of each ligand concentration are displayed in the middle of culture time (around at 15 hours), which is similar to our experimental data. Finally, the RFP of all groups reduce slowly.

默认文字

Fig. 4 The simulation result of RFP intensity in population level.

Part 2: Wet experiments of T1R2

Design

We construct the part by Overlap Extension PCR. And the Gal1/Gal10 promoter and the CYC1 terminator stem from the PESC-Ura plasmid.

Result

In our experiment, the T1R2 gene is used to accept the signal inputted in our whole pathway. We synthesized this part by OE-PCR.

默认文字

Fig.5 The electrophoresis of the positive result of T1R2. <p>Then the expression and location of the receptor are detected by immunofluorescence. The principle of immunofluorescence is that the antibody A binds to the tag, and then the fluorescent antibody B binds to the A. This is the positive result of our immunofluorescence.

默认文字

Fig.6 Immunofluorescence of T1R2/T1R3 in yeast. The scale bars represent 10µm

As the result of combination model established, we can see the curve of RFP intensity does not increase at first 5 hours, and then the RFP intensity increases rapidly among 5-15 hours. At the same time, the differences of each ligand concentration are displayed in the middle of culture time (around at 15 hours), which is similar to our experimental data. Finally, the RFP of all groups reduce slowly after 15 hours.

默认文字

Fig. 7 The fluorescence intensity of different sweeteners


[1] Morini G, Bassoli A, Temussi P A. Journal of Medicinal Chemistry, 2005, 48(17):5520-9.

[2] Neumoin A, Cohen L S, Arshava B, et al. Biophysical Journal, 2009, 96(8):3187-3196.

[3] Bohlmann L, Tredwell G D, Yu X, et al. Nature Chemical Biology, 2015, 11(12):955.

[4] Dubois G E. Molecular mechanism of sweetness sensation.[J]. Physiology & Behavior, 2016, 164(Pt B):453.

[5] Kofahl B, Klipp E. Modelling the dynamics of the yeast pheromone pathway.[J]. Yeast, 2004, 21(10):831.

[6] Richardson, Kathryn. Mechanisms of GPCR signal regulation in fission yeast[J]. University of Warwick, 2014.

[7] Nie Y, Vigues S, Hobbs J R, et al. Distinct contributions of T1R2 and T1R3 taste receptor subunits to the detection of sweet stimuli.[J]. Current Biology Cb, 2005, 15(21):1948-52.

[8] Audet M, Bouvier M. Restructuring G-Protein- Coupled Receptor Activation[J]. Cell, 2012, 151(1):14-23.









Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 563
    Illegal BglII site found at 2061
    Illegal BglII site found at 2481
    Illegal BglII site found at 2643
    Illegal BamHI site found at 674
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 291
    Illegal AgeI site found at 1572
    Illegal AgeI site found at 2790
  • 1000
    COMPATIBLE WITH RFC[1000]