Difference between revisions of "Part:BBa K1965034"

Revision as of 17:41, 18 October 2016 (view source) E Merljak (Talk | contribs) ← Older edit		Latest revision as of 17:52, 18 October 2016 (view source) E Merljak (Talk | contribs)
(One intermediate revision by the same user not shown)
Line 91:		Line 91:
	<div align = "left">		<div align = "left">
	<figure data-ref="2">		<figure data-ref="2">
−	<img class="ui medium image" src=" https://static.igem.org/mediawiki/2016/b/b5/T--Slovenia--BBa_K1965034%282%28.PNG " >	+	<img class="ui medium image" src=" https://static.igem.org/mediawiki/2016/8/8e/T--Slovenia--BBa_K1965034.PNG " >
	<figcaption><b>Protease orthogonality </b><br/>HEK293T cells were transfected with 100 ng of cycLuc_SuMMVs reporter and 70 ng of the indicated proteases. Luciferase activity was detected only in the presence of the cycLuc_SuMMVs reporter and SuMMVp.</figcaption>		<figcaption><b>Protease orthogonality </b><br/>HEK293T cells were transfected with 100 ng of cycLuc_SuMMVs reporter and 70 ng of the indicated proteases. Luciferase activity was detected only in the presence of the cycLuc_SuMMVs reporter and SuMMVp.</figcaption>
	</figure>		</figure>

---

Latest revision as of 17:52, 18 October 2016

cycLuc_SuMMVs

Introduction

The cyclic luciferase system enhances the circularly permuted luciferase (cpLuc) ^[1,2] by fusing two fragments of an intein to the ends of cpLuc ^[3,4]. Inteins are protein fragments that allow protein splicing and cyclization by formation of a new peptide bond between the N- and C-termini of the protein. We expected this reporter to result in a higher signal due to the stabilization of the protein by cyclization (1). To further optimize the dynamic range of the system, a PEST sequence for fast degradation of the protein was included at the C-terminus of the protein. This sequence targets any of the unspliced protein to degradation, while the spliced cyclic protein remains stable, since the PEST sequence is excised along with the intein fragments during the splicing reaction ^[3,4].

Cyclic luciferase with the SuMMVs sequence (cycLuc_SuMMVs) contains the circularly permutated firefly luciferase, flanked by intein sequences. The two parts of fLuc are connected through the SuMMVp recognition sequence (EEIHLQ-S).

Characterization

This construct was expressed under the CMV promoter and used for testing the orthogonality of different TEVp homologs and studying the activity split SuMMVp by measuring the activity of fLuc. The coding sequence for cycLuc_SuMMVs was deposited in pSB1C3.

For testing the orthogonality, HEK293T cells were cotransfected by the plasmids with the whole protease and cycLuc reporters as shown on 2.

To test the activity of split proteases, HEK293T cells were cotransfected by the plasmids with rapamycin inducible split protease and corresponding cycLuc reporter as shown on 3.

References

^[1]Fan, F., Binkowski, B. F., Butler, B. L., Stecha, P. F., Lewis, M. K., & Wood, K. V. (2008). Novel genetically encoded biosensors using firefly luciferase. ACS Chemical Biology, 3(6), 346–351. https://doi.org/10.1021/cb8000414
^[2]Wigdal, S. S., Anderson, J. L., Vidugiris, G. J., Shultz, J., Wood, K. V, & Fan, F. (2008). A novel bioluminescent protease assay using engineered firefly luciferase. Current Chemical Genomics, 2, 16–28. https://doi.org/10.2174/1875397300802010016
^[3]Kanno A., Yamanaka Y., Hirano H., Umezawa Y., Ozawa T. 2007. Cyclic Luciferase for Real-Time Sensing of Caspase-3 Activities in Living Mammals.
^[4]Kanno A., Umezawa Y., Ozawa, T. 2009. Detection of Apoptosis Using Cyclic Luciferase in Living Mammals.

Sequence and Features