Difference between revisions of "Part:BBa K1897001:Design"

(→‎References)
(→‎References)
 
(One intermediate revision by the same user not shown)
Line 13: Line 13:
 
===Source===
 
===Source===
  
−
The HasA coding sequence is originally found in the Serratia marcescens and to construct this part, we used the HasA gene that is from the part BBa K1897000 which was synthesised based on the gene sequence from the National Center for Biotechnology Information (NCBI) database (http://www.ncbi.nlm.nih.gov/nuccore/X81195.2). The Promoter, RBS and terminator are biobrick parts that were obtained from the Distribution kits from iGEM.  
+
The HasA gene is originally found in the Serratia marcescens. We synthesised the part from the Serratia marcescens genome, obtaining the gene sequence from the National Center for Biotechnology Information (NCBI) database (http://www.ncbi.nlm.nih.gov/nuccore/X81195.2), including a hexa histadine tag before the stop codon. The Promoter, RBS and terminator are biobrick parts that were obtained from the Distribution kits from iGEM.
  
 
===References===
 
===References===
−
Serratia marcescens hasA, has B, hasD, hasE, hasI, hasR and hasS genes. Retrieved May 2016 from http://www.ncbi.nlm.nih.gov/nuccore/X81195.2
 
  
−
Cescau, S., Cwerman, H., Letoffe, S., Delepelaire, P., Wandersman, C., & Biville, F. (2007). Heme acquisition by hemophores. Biometals, 20(3-4), 603-613.
+
Cescau, S., Cwerman, H., Letoffe, S., Delepelaire, P., Wandersman, C., & Biville, F. (2007). ''Heme acquisition by hemophores.'' Biometals, 20(3-4), 603-613.
  
−
Wandersman, C., & Delepelaire, P. (2004). Bacterial iron sources: from siderophores to hemophores. Annu. Rev. Microbiol., 58, 611-647.
+
Wandersman, C., & Delepelaire, P. (2004). ''Bacterial iron sources: from siderophores to hemophores.'' Annu. Rev. Microbiol., 58, 611-647.

Latest revision as of 19:30, 11 October 2016


HasA hemophore expression unit


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 480


Design Notes

The presence of a hexa histidine tag would allow for easy protein purification and detection using anti-his antibodies. The promoter BBa_K525998 was chosen as we wished to induce high levels of HasA for purification thus we required a T7 promoter that could be used to induce expression at high levels in E. coli strain BL21(DE3). The terminator BBa_B0015 was chosen as it is commonly used and has a high efficacy.


Source

The HasA gene is originally found in the Serratia marcescens. We synthesised the part from the Serratia marcescens genome, obtaining the gene sequence from the National Center for Biotechnology Information (NCBI) database (http://www.ncbi.nlm.nih.gov/nuccore/X81195.2), including a hexa histadine tag before the stop codon. The Promoter, RBS and terminator are biobrick parts that were obtained from the Distribution kits from iGEM.

References

Cescau, S., Cwerman, H., Letoffe, S., Delepelaire, P., Wandersman, C., & Biville, F. (2007). Heme acquisition by hemophores. Biometals, 20(3-4), 603-613.

Wandersman, C., & Delepelaire, P. (2004). Bacterial iron sources: from siderophores to hemophores. Annu. Rev. Microbiol., 58, 611-647.