Difference between revisions of "Part:BBa K1957001"

Latest revision as of 18:43, 13 October 2016

HydC subunit of FeFe Hydrogenase

One of the three subunits that make up FeFe Hydrogenase in Shewanella oneidensis. Specifically this is the HydC subunit, which is the outer periplasmic subunit. This unit is one out of the three subunits that can be used to make the entire FeFe hydrogenase construct.

Figure 1: PCR Colony of FeFe Hydrogenase subunits. Lanes 8 and 9 have HydC/Fdh (606) gene insert, which is 764bp. Ladder is Hyperladder Kb, sizes shown in bp

DNA of the colony on lane 8 was sent off for sequencing. After sequencing confirmation this was submitted to the iGEM registry. A Golden Gate cloning strategy was used with parts BBa_K1957002 & BBa_K1957004 to assemble the HydABC hydrogenase gene cluster into a single expression vector, with a C-terminal strep-tag on the B subunit. A Golden Gate cloning strategy was also used with parts BBa_K1957003 & BBa_K1957004 to assemble the HydABC gene cluster into a single pBAD expression vector with an N-terminal strep-tag on the B subunit.

Restriction site incompatibility, [1000], is with regards to MoClo or Golden Gate cloning. This restriction site was used in the described Golden Gate cloning experiments in order to assemble the gene cluster into a single expression vector. The Bsal restriction enzyme sites flank the coding sequence, and digestion with Bsal should not disrupt the protein coding sequence. For more details on our Golden Gate cloning strategy and instructions on how to assemble the HydABC gene cluster into a single expression vector please see the NRP-UEA 2016 iGEM teams wiki.

Figure 2: Screenshot of sequencing data of colony aligned with HydC/Fdh using Benchling. DNA sequence of screenshot starts at 344bp

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI site found at 1
Illegal BsaI.rc site found at 700

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 <partinfo>BBa_K1957001 short</partinfo>
-One of the three subunits that make up FeFe Hydrogenase in Shewanella oneidensis. Specifically this is the HydC subunit, which is the outer periplasmic subunit. This unit is one out of the three subunits that can be used to make a the entire FeFe hydrogenase construct.
+One of the three subunits that make up FeFe Hydrogenase in ''Shewanella oneidensis''. Specifically this is the HydC subunit, which is the outer periplasmic subunit. This unit is one out of the three subunits that can be used to make the entire FeFe hydrogenase construct. [[File:T--NRP-UEA-Norwich--Gel_PCR_Colony_FeFe_.jpg|thumb|none|'''Figure 1: PCR Colony of FeFe Hydrogenase subunits.''' Lanes 8 and 9 have HydC/Fdh (606) gene insert, which is 764bp. Ladder is Hyperladder Kb, sizes shown in bp]]
-[[File:T--NRP-UEA-Norwich--Gel_PCR_Colony_FeFe_.jpg|thumb|Figure 1: PCR Colony of FeFe Hydrogenase subunits. Lanes 8 and 9 have HydC/Fdh (606) gene insert, which is 764bp.]] DNA of the colony on lane 8 was sent off for sequencing. After sequencing confirmation it was used for the Golden Gate cloning and submitted into the iGEM registry.
+DNA of the colony on lane 8 was sent off for sequencing. After sequencing confirmation this was submitted to the iGEM registry. A Golden Gate cloning strategy was used with parts BBa_K1957002 & BBa_K1957004 to assemble the HydABC hydrogenase gene cluster into a single expression vector, with a C-terminal strep-tag on the B subunit. A Golden Gate cloning strategy was also used with parts BBa_K1957003 & BBa_K1957004 to assemble the HydABC gene cluster into a single pBAD expression vector with an N-terminal strep-tag on the B subunit.
+Restriction site incompatibility, [1000], is with regards to MoClo or Golden Gate cloning. This restriction site was used in the described Golden Gate cloning experiments in order to assemble the gene cluster into a single expression vector. The ''Bsal'' restriction enzyme sites flank the coding sequence, and digestion with ''Bsal'' should not disrupt the protein coding sequence. For more details on our Golden Gate cloning strategy and instructions on how to assemble the HydABC gene cluster into a single expression vector please see the NRP-UEA 2016 iGEM teams wiki.
+ [[File:T--NRP-UEA-Norwich--Sequencing_Data_606_.jpg|thumb|none|'''Figure 2: Screenshot of sequencing data of colony aligned with HydC/Fdh using Benchling'''. DNA sequence of screenshot starts at 344bp ]]
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