Difference between revisions of "Part:BBa K1378003"
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<partinfo>BBa_K1378003 short</partinfo>
 
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<figure><img src="https://static.igem.org/mediawiki/2014/b/ba/IGEM_logo_pek.png"/></figure>
  
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<p>This plasmid is a basic part of the mannan binding lectin <b>Microvirin (MVN)</b>. Microvirin can be expressed in <i>E. coli</i> and it can bind to <i>Micorcystis aeruginosa</i> PCC7806 specifically.
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<html><img style="float:left;width:64px;margin-right:2em" src="https://static.igem.wiki/teams/4765/wiki/2023-b-home.png" alt="contributed by Fudan iGEM 2023"></html>
  
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<!-- Add more about the biology of this part here
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===Improved by Fudan iGEM 2023 ===
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Intimin which includes a short N-terminal signal peptide to direct its trafficking to the periplasm, a LysM domain for peptidoglycan binding, and a beta-barrel for transmembrane insertion<ref>Piñero-Lambea, C., Bodelón, G., Fernández-Periáñez, R., Cuesta, A. M., Álvarez-Vallina, L., & Fernández, L. Á. (2015). Programming controlled adhesion of E. coli to target surfaces, cells, and tumors with synthetic adhesins. ACS Synthetic Biology, 4(4), 463–473. https://doi.org/10.1021/sb500252a</ref> , possesses the outer membrane anchoring of MVN.Instead of using INPNC-MVN fusion, we introduce intimin as a surface display system to present MVN, thus facilitating adhesion between ''E. coli'' and ''Microcystis aeruginosa'' PCC7806.
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====Improved part====
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Our improved part is [https://parts.igem.org/Part:BBa_K4765109 BBa_K4765109 (Twister P1 + T7_RBS + intimin-MVN fusion + stem-loop)]
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. We introduce intimin as a surface display system to present MVN and construct this part into our ribozyme-assisted polycistronic co-expression system.
  
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===Usage and Biology===
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=='''Introduction'''==
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<p>MVN is a lectin isolated from the cyanobacteria <i>Microcystis aeruginosa</i> PCC7806. It is an 108 aa protein that consists of 2 domains. According to a carbohydrate microarray carried out previously, MVN binds to carbohydrate and the highest signals are observed with structures that contain α(1→2) linked mannose residues <sup>[1]</sup>. A binding partner of MVN was identified in the lipopolysaccharide (LPS) fraction of <i>M. aeruginosa</i> PCC7806 and it possibly represents the O-antigen of a LPS. MVN has been previously expressed in <i>E. coli</i> and its binding effect to cyanobacteria cells is species-specific <sup>[1]</sup>.
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<figure><img src="https://static.igem.org/mediawiki/2014/0/03/Peking2014ZZJ_MVN.png"/><figcaption><b>Figure 1.</b> Solution structure of MVN. MVN consists of 2 domains, domain A and domain B, which are colored yellow and blue respectively. Domain A is formed by residues 38-93 while domain B is formed by residues 1-37 and 94-108. The mannan binding site is only found in domain A. This figure is taken from Protein Data Bank (PDB ID: 2Y1S).</figcaption></figure>
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This plasmid is a basic part of the mannan binding lectin <b>Microvirin (MVN)</b>. Microvirin can be expressed in <i>E. coli</i> and it can bind to <i>Microcystis aeruginosa</i> PCC7806 specifically.
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<!-- Add more about the biology of this part here
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===Usage and Biology===
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K1378003 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K1378003 SequenceAndFeatures</partinfo>
  
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=='''Usage and Biology'''==
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<p>MVN is a lectin isolated from the cyanobacteria <i>Microcystis aeruginosa</i> PCC7806. It is an 108 aa protein that consists of 2 domains. According to a carbohydrate microarray carried out previously, MVN binds to carbohydrate and the highest signals are observed with structures that contain α(1→2) linked mannose residues <sup>[1]</sup>. A binding partner of MVN was identified in the lipopolysaccharide (LPS) fraction of <i>M. aeruginosa</i> PCC7806 and it possibly represents the O-antigen of a LPS. MVN has been previously expressed in <i>E. coli</i> and its binding effect to cyanobacteria cells is species-specific <sup>[1]</sup>. </p>
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<figure style="text-align: center"><img style="width:30%" src="https://static.igem.org/mediawiki/2014/0/03/Peking2014ZZJ_MVN.png"
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/><figcaption style="text-align:left"><b>Figure 1.</b> Solution structure of MVN. MVN consists of 2 domains, domain A
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and domain B, which are colored yellow and blue respectively. Domain A is formed by residues 38-93 while domain B is
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formed by residues 1-37 and 94-108. The mannan binding site is only found in domain A. This figure is taken from
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Protein Data Bank (PDB ID: 2Y1S).</figcaption></figure>
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</html>
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<br>
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<br>
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=='''Reference'''==
  
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<p>1.Kehr, J. C., Zilliges, Y., Springer, A., Disney, M. D., Ratner, D. D., Bouchier, C., ... & Dittmann, E. (2006). A mannan binding lectin is involved in cell–cell attachment in a toxic strain of Microcystis aeruginosa. Molecular microbiology, 59(3), 893-906.</p>
 
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===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K1378003 parameters</partinfo>
 
<partinfo>BBa_K1378003 parameters</partinfo>
 
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Latest revision as of 10:44, 12 October 2023

Microvirin (MVN)---a lectin from Microcystis aeruginosa


contributed by Fudan iGEM 2023

Improved by Fudan iGEM 2023

Intimin which includes a short N-terminal signal peptide to direct its trafficking to the periplasm, a LysM domain for peptidoglycan binding, and a beta-barrel for transmembrane insertion[1] , possesses the outer membrane anchoring of MVN.Instead of using INPNC-MVN fusion, we introduce intimin as a surface display system to present MVN, thus facilitating adhesion between E. coli and Microcystis aeruginosa PCC7806.

Improved part

Our improved part is BBa_K4765109 (Twister P1 + T7_RBS + intimin-MVN fusion + stem-loop) . We introduce intimin as a surface display system to present MVN and construct this part into our ribozyme-assisted polycistronic co-expression system.

Introduction

This plasmid is a basic part of the mannan binding lectin Microvirin (MVN). Microvirin can be expressed in E. coli and it can bind to Microcystis aeruginosa PCC7806 specifically.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 23

Usage and Biology

MVN is a lectin isolated from the cyanobacteria Microcystis aeruginosa PCC7806. It is an 108 aa protein that consists of 2 domains. According to a carbohydrate microarray carried out previously, MVN binds to carbohydrate and the highest signals are observed with structures that contain α(1→2) linked mannose residues [1]. A binding partner of MVN was identified in the lipopolysaccharide (LPS) fraction of M. aeruginosa PCC7806 and it possibly represents the O-antigen of a LPS. MVN has been previously expressed in E. coli and its binding effect to cyanobacteria cells is species-specific [1].

Figure 1. Solution structure of MVN. MVN consists of 2 domains, domain A and domain B, which are colored yellow and blue respectively. Domain A is formed by residues 38-93 while domain B is formed by residues 1-37 and 94-108. The mannan binding site is only found in domain A. This figure is taken from Protein Data Bank (PDB ID: 2Y1S).


Reference

1.Kehr, J. C., Zilliges, Y., Springer, A., Disney, M. D., Ratner, D. D., Bouchier, C., ... & Dittmann, E. (2006). A mannan binding lectin is involved in cell–cell attachment in a toxic strain of Microcystis aeruginosa. Molecular microbiology, 59(3), 893-906.

  1. ↑ Piñero-Lambea, C., Bodelón, G., Fernández-Periáñez, R., Cuesta, A. M., Álvarez-Vallina, L., & Fernández, L. Á. (2015). Programming controlled adhesion of E. coli to target surfaces, cells, and tumors with synthetic adhesins. ACS Synthetic Biology, 4(4), 463–473. https://doi.org/10.1021/sb500252a