Difference between revisions of "Part:BBa K1381014"

Latest revision as of 16:46, 16 October 2014

Silencing sRNA (10 bases long) for USP45 (Based on Spot42)
This is a mutagenesis of the antisense site of the small RNA Spot42. It contains the J23101 promoter.

Biology

The sRNA has its base from the gene spot42. It consists of an antisense region that recognizes a specific sequence and another region that recruits the protein Hfq. The Hfq protein blocks and prevents the targeted mRNA from binding to the ribosome. This will stop the translation of the USP45 protein complex and no protein should be produced. We have redesigned the antisense region so it will specifically recognize our USP45. The antisense region is ten nucleotides long. The antisense region will make it bind to our USP45 and recruit the Hfq protein to stick to that region. USP45 is a secretion tag that we coupled to colicins Fy. However, in theory it should work with anything you couple to USP45.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 7
Illegal NheI site found at 30
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 1: / Line 1: @@
 __NOTOC__
-<partinfo>BBa_K1381014 short</partinfo>
+<partinfo>BBa_K1381014 short</partinfo><br>
+This is a mutagenesis of the antisense site of the small RNA [https://parts.igem.org/Part:BBa_K864440 Spot42].
+It contains the [https://parts.igem.org/Part:BBa_J23101 J23101 promoter].
+<h2>Biology</h2>
+The sRNA has its base from the gene spot42. It consists of an antisense region that recognizes a specific sequence and another region that recruits the protein Hfq. The Hfq protein blocks and prevents the targeted mRNA from binding to the ribosome. This will stop the translation of the USP45 protein complex and no protein should be produced.
+We have redesigned the antisense region so it will specifically recognize our USP45. The antisense region is ten nucleotides long. The antisense region will make it bind to our USP45 and recruit the Hfq protein to stick to that region. USP45 is a secretion tag that we coupled to [https://parts.igem.org/Part:BBa_K1381018 colicins Fy]. However, in theory it should work with anything you couple to USP45.
 <!-- Add more about the biology of this part here
 ===Usage and Biology===
-Silencing sRNA (10 bases long) for USP45 (Based on Spot42)
-This is a mutagenesis of the antisense site of the small RNA [https://parts.igem.org/Part:BBa_K864440 spot42]. It contains the J23101 promoter [https://parts.igem.org/Part:BBa_J23101 J23101 promoter].
-Biology
-The sRNA has its base from the gene spot42. It consists of an antisense region that recognizes a specific RNA sequence and another region that recruits the protein Hfq. The Hfq protein blocks and prevents mRNA from binding to the ribosome. This will stop the translation of the USP45 protein complex and no protein product should be produced.
-We have redesigned the antisense region so it will specifically recognize our USP45. The antisense region is ten nucleotides long. The antisense region will make it bind to our USP45 and recruit the Hfq protein to stick on that region. USP45 is a secretion tag that we coupled with colicins Fy (https://parts.igem.org/Part:BBa_K1381018). But in theory it should work with whatever you couple to USP45.