Difference between revisions of "Part:BBa K1033905"
 
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This part is useful as a reporter.
 
This part is useful as a reporter.
  
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[[Image:Uppsala2013_chromoproteins.JPG|900px]]
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[[Image:AmilCP_and_tsPurple.jpg|900px]]
  
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'''iGEM13_Uppsala:''' Expression of chromoproteins. The images above show ''E coli'' constitutively expressing meffRed <partinfo>BBa_K1033922</partinfo>, aeBlue <partinfo>BBa_K1033929</partinfo>, tsPurple <partinfo>BBa_K1033905</partinfo>, asPink (asCP) <partinfo>BBa_K1033927</partinfo>, fwYellow <partinfo>BBa_K1033910</partinfo>, meffBlue <partinfo>BBa_K1033902</partinfo>, meffRed <partinfo>BBa_K1033922</partinfo> and scOrange <partinfo>BBa_K1033913</partinfo>.
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'''iGEM2013 Uppsala:''' The images above show ''E coli'' constitutively expressing the chromoproteins amilCP <partinfo>BBa_K592009</partinfo> and tsPurple <partinfo>BBa_K1033906</partinfo> from the high copy plasmid pSB1C3 from the promoters J23116 and J23110.
  
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===Characterization===
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Team:NJTech_China 2022
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<Br>
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Hoping to make a useful contribution for future iGEM teams,we completed the experimental characterization of  existing parts tsPurple, purple chromoprotein(incl RBS) and meffBlue, blue chromoprotein and provided new documents for both of them.
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The tsPurple sequence (Part:BBa_K1033905) optimized for E. coli was incorporated into plasmid pET-29a(+), transformed into E. coli BL21 for characterization and measurement. We provided tsPurple with results and data based on protein expression and purification, TOF-Mass spectrometry,  and Swiss-model.
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<Br>
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<Br>
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Methods:<Br>
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SDS-PAGE, ultramicro spectrophotometer ,TOF-Mass Spectrometry, and Swiss-Model.
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<Br>
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<Br>
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Results:
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[[Image:tsPurple.png|500px|center]]
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                                      Fig.1 The fermentation broth of tsPurple          Fig.2 Proteins after secondary ultrafiltration<Br>
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<Br>
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Conclusion: The cell pellet was collected by harvesting 50mL culture after 24h of induction followed by centrifugation at 4 degrees and 6000 rpm for 10min. Then, we performed ultrasonic disruption and collected the supernatant after centrifugation. The protein was purified and collected through ultrafiltration and affinity chromatography.
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<Br>
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[[Image:ts_SDS_PAGE.png|500px|center]]
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                                            Fig.3 SDS-PAGE of the chromoprotein tsPurple<Br>
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1· tsPurple- The culture without IPTG induction. <Br>
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2· tsPurple- Supernatant without IPTG induction after sonication.<Br>
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3· tsPurple- The sedimentation without IPTG induction and after sonication.<Br>
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4· tsPurple- Supernatant sample without IPTG induction after sonication.<Br>
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5· tsPurple- The sedimentation after IPTG induction and ultrasound.<Br>
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6· tsPurple- The culture after IPTG induction.<Br>
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7· tsPurple- Protein sample after the ultrafiltration (diluted 5 times).<Br>
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8. tsPurple- Protein after GST affinity chromatography.<Br>
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9· tsPurple- Purified protein sample.<Br>
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<Br>
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Conclusion: The protein gel preliminarily proved that the molecular mass of the tsPurple protein was correct, which is consistent with the expected molecular mass of tsPurple protein (the molecular mass of amajLime protein is about 26.9 kDa). Compared with lane 5, 6 and 7, lane 1, 2,3 and 4 indicate that more tsPurple protein can be obtained with IPTG induction. As is shown in lane 8, the concentration of protein was increased after ultrafiltration concentration. Lane 9 shows that the purification effect of protein after nickel affinity chromatography was better, and the impurity protein was less than before affinity chromatography. In conclusion, it can be seen that our expression and purification strategy is effective.
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<Br>
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[[Image:ts_T.png|500px|center]]
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                                                  Fig. 4 concentration of the tsPurple protein samples<Br>
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Conclusion:We used the ultramicro spectrophotometer to measure the concentration of tsPurple protein. The concentration of tsPurple samples was 0.7533 mg/ml
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<Br>
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[[Image:ts_TOF_MS.png|500px|center]]
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                                                    Fig.5 TOF MS of tsPurple.<Br>
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Conclusion: We performed a Time of Flight Mass Spectrometer on the purified HIS-tagged tsPurple protein. The predicted molecular mass of this protein is about 26.9KDa. The result of TOF-Mass Spectrometry showed that the specific molecular mass of tsPurple protein is 26.27Da (the value of the sharpest peak is shown as the molecular mass of tsPurple protein).<Br>
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<Br>
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Structural modeling results of the tsPurple protein based on Swiss-Model<Br>
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[[Image:ts_model_p1.png|500px|center]]
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[[Image:ts_model_p2.png|500px|center]]
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[[Image:ts_model_p3.png|500px|center]]
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                                  Fig.6-1 The results of the homology and structural modelling protein tsPurple.<Br>
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[[Image:ts_model_3d.png|500px|center]]
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                                  Fig.6-2 The 3D model of the homology and structural modelling protein tsPurple.<Br>
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Conclusion: We used Swiss-Model to simulate the three-dimensional structure of tsPurple protein. The above figures showed the modeling result of Swiss-Model.<Br>
  
 
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Latest revision as of 14:10, 12 October 2022

tsPurple, purple chromoprotein (incl RBS)

This chromoprotein (also known as TinselPurple) naturally exhibits strong color when expressed.

Usage and Biology

This part is useful as a reporter.

AmilCP and tsPurple.jpg

iGEM2013 Uppsala: The images above show E coli constitutively expressing the chromoproteins amilCP BBa_K592009 and tsPurple BBa_K1033906 from the high copy plasmid pSB1C3 from the promoters J23116 and J23110.


Characterization

Team:NJTech_China 2022
Hoping to make a useful contribution for future iGEM teams,we completed the experimental characterization of existing parts tsPurple, purple chromoprotein(incl RBS) and meffBlue, blue chromoprotein and provided new documents for both of them. The tsPurple sequence (Part:BBa_K1033905) optimized for E. coli was incorporated into plasmid pET-29a(+), transformed into E. coli BL21 for characterization and measurement. We provided tsPurple with results and data based on protein expression and purification, TOF-Mass spectrometry, and Swiss-model.

Methods:
SDS-PAGE, ultramicro spectrophotometer ,TOF-Mass Spectrometry, and Swiss-Model.

Results:

TsPurple.png
                                     Fig.1 The fermentation broth of tsPurple          Fig.2 Proteins after secondary ultrafiltration


Conclusion: The cell pellet was collected by harvesting 50mL culture after 24h of induction followed by centrifugation at 4 degrees and 6000 rpm for 10min. Then, we performed ultrasonic disruption and collected the supernatant after centrifugation. The protein was purified and collected through ultrafiltration and affinity chromatography.

Ts SDS PAGE.png
                                           Fig.3 SDS-PAGE of the chromoprotein tsPurple

1· tsPurple- The culture without IPTG induction.
2· tsPurple- Supernatant without IPTG induction after sonication.
3· tsPurple- The sedimentation without IPTG induction and after sonication.
4· tsPurple- Supernatant sample without IPTG induction after sonication.
5· tsPurple- The sedimentation after IPTG induction and ultrasound.
6· tsPurple- The culture after IPTG induction.
7· tsPurple- Protein sample after the ultrafiltration (diluted 5 times).
8. tsPurple- Protein after GST affinity chromatography.
9· tsPurple- Purified protein sample.

Conclusion: The protein gel preliminarily proved that the molecular mass of the tsPurple protein was correct, which is consistent with the expected molecular mass of tsPurple protein (the molecular mass of amajLime protein is about 26.9 kDa). Compared with lane 5, 6 and 7, lane 1, 2,3 and 4 indicate that more tsPurple protein can be obtained with IPTG induction. As is shown in lane 8, the concentration of protein was increased after ultrafiltration concentration. Lane 9 shows that the purification effect of protein after nickel affinity chromatography was better, and the impurity protein was less than before affinity chromatography. In conclusion, it can be seen that our expression and purification strategy is effective.

Ts T.png
                                                  Fig. 4 concentration of the tsPurple protein samples

Conclusion:We used the ultramicro spectrophotometer to measure the concentration of tsPurple protein. The concentration of tsPurple samples was 0.7533 mg/ml

Ts TOF MS.png
                                                    Fig.5 TOF MS of tsPurple.

Conclusion: We performed a Time of Flight Mass Spectrometer on the purified HIS-tagged tsPurple protein. The predicted molecular mass of this protein is about 26.9KDa. The result of TOF-Mass Spectrometry showed that the specific molecular mass of tsPurple protein is 26.27Da (the value of the sharpest peak is shown as the molecular mass of tsPurple protein).

Structural modeling results of the tsPurple protein based on Swiss-Model

Ts model p1.png
Ts model p2.png
Ts model p3.png
                                 Fig.6-1 The results of the homology and structural modelling protein tsPurple.
Ts model 3d.png
                                 Fig.6-2 The 3D model of the homology and structural modelling protein tsPurple.

Conclusion: We used Swiss-Model to simulate the three-dimensional structure of tsPurple protein. The above figures showed the modeling result of Swiss-Model.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]