Difference between revisions of "Part:BBa C0020:Design"
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__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_C0020 short</partinfo> | <partinfo>BBa_C0020 short</partinfo> | ||
<partinfo>BBa_C0020 SequenceAndFeatures</partinfo> | <partinfo>BBa_C0020 SequenceAndFeatures</partinfo> | ||
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===Design Notes=== | ===Design Notes=== | ||
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A BioBricks restriction site for PstI was at position 260. As a result, the codon starting at position 262 was changed from "gca" to "gcg". | A BioBricks restriction site for PstI was at position 260. As a result, the codon starting at position 262 was changed from "gca" to "gcg". | ||
− | The terminating codon at the end, "tga", was changed to "taataa" as per BioBrick regulations | + | The terminating codon at the end, "tga", was changed to "taataa" as per the Registry's [[Help:Protein coding#Regulations_for_Protein_Coding_Parts|BioBrick regulations for coding parts]]. |
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===Source=== | ===Source=== | ||
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*Organism: NCBI - Escherichia coli K12 MG1655 (NC_000913) | *Organism: NCBI - Escherichia coli K12 MG1655 (NC_000913) | ||
*Paper: P Matsumura, J J Rydel, R Linzmeier and D Vacante. Journal of Bacteriology. 1984 "Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein." [http://jb.asm.org/cgi/content/abstract/160/1/36?vol=160&fp=36&view=abstract link] | *Paper: P Matsumura, J J Rydel, R Linzmeier and D Vacante. Journal of Bacteriology. 1984 "Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein." [http://jb.asm.org/cgi/content/abstract/160/1/36?vol=160&fp=36&view=abstract link] | ||
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− | + | ===References=== | |
− | * | + | *Databases: |
+ | ** UniProt ID [http://www.pir.uniprot.org/cgi-bin/upEntry?id=CHEY_ECOLI P0AE67; P06143] | ||
+ | ** SwissProt data available [http://ca.expasy.org/cgi-bin/niceprot.pl?CHEY_ECOLI here] | ||
+ | ** NCBI sequence data [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=946393 946393] | ||
+ | ** EchoBase [http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=EB0148 EB0148] |
Latest revision as of 15:19, 20 July 2006
CheY "tumbling" chemotaxis coding sequence
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
Changes from the NCBI sequence: A BioBricks restriction site for PstI was at position 260. As a result, the codon starting at position 262 was changed from "gca" to "gcg".
The terminating codon at the end, "tga", was changed to "taataa" as per the Registry's BioBrick regulations for coding parts.
Source
- Organism: NCBI - Escherichia coli K12 MG1655 (NC_000913)
- Paper: P Matsumura, J J Rydel, R Linzmeier and D Vacante. Journal of Bacteriology. 1984 "Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein." [http://jb.asm.org/cgi/content/abstract/160/1/36?vol=160&fp=36&view=abstract link]
References
- Databases:
- UniProt ID [http://www.pir.uniprot.org/cgi-bin/upEntry?id=CHEY_ECOLI P0AE67; P06143]
- SwissProt data available [http://ca.expasy.org/cgi-bin/niceprot.pl?CHEY_ECOLI here]
- NCBI sequence data [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=946393 946393]
- EchoBase [http://www.biolws1.york.ac.uk/echobase/Gene.cfm?recordID=EB0148 EB0148]