Difference between revisions of "Part:BBa K1092003:Design"
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===Design Notes=== | ===Design Notes=== | ||
− | + | We codon optimized ''catechol 1,2-dioxygenase'' (EC 1.13.11.1) gene from ''Pseudomonas putida'' KT 2400. | |
+ | ===Source=== | ||
+ | Gene synthesis | ||
+ | ===References=== | ||
− | + | [1] Cao, B., Geng, A. and Lou, K., 2008. Induction of ortho- and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes. ''Applied Microbiology and Biotechnology'', 81(1), pp. 99-107. | |
− | + | [2] Kim, Y.H., Cho, K., Yun, S., Kim, J.Y., Kwon, K., Yoo, J.S. and Kim, S.I., 2006. Analysis of aromatic catabolic pathways in ''Pseudomonas putida'' KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. ''Proteomics'', 6(4), pp. 1301-1318. | |
− | + | [3] Hadibarata, T. and Kristanti, R.A., 2012. Identification of metabolites from benzo[a]pyrene oxidation by ligninolytic enzymes of Polyporus sp. S133. ''Journal of environmental management'', 111(0), pp. 115-119. | |
+ | |||
+ | [4] Naiem H., Nadaf, Jai S. Ghosh., 2011. Purification and characterizationof catechol 1, 2-dioxygenase from ''Rhodococcus sp''. NCIM 2891. ''Research Journal of Environmental and Earth Sciences'', 3(5),pp. 608-613. | ||
+ | |||
+ | [5] Rosenberg D. 1998. Methods for analyzing trend data. In: Analytic Methods in Maternal and Child Health. Editors: Handler, A, Rosenberg, D, Monahan, C, Kennelly, ''J. Washington DC: Maternal and Child Health Bureau'', HRSA, DHHS, pp. 191–231. |
Latest revision as of 02:38, 28 September 2013
T7-RBS-Dioxygenase
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 176
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
We codon optimized catechol 1,2-dioxygenase (EC 1.13.11.1) gene from Pseudomonas putida KT 2400.
Source
Gene synthesis
References
[1] Cao, B., Geng, A. and Lou, K., 2008. Induction of ortho- and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes. Applied Microbiology and Biotechnology, 81(1), pp. 99-107.
[2] Kim, Y.H., Cho, K., Yun, S., Kim, J.Y., Kwon, K., Yoo, J.S. and Kim, S.I., 2006. Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. Proteomics, 6(4), pp. 1301-1318.
[3] Hadibarata, T. and Kristanti, R.A., 2012. Identification of metabolites from benzo[a]pyrene oxidation by ligninolytic enzymes of Polyporus sp. S133. Journal of environmental management, 111(0), pp. 115-119.
[4] Naiem H., Nadaf, Jai S. Ghosh., 2011. Purification and characterizationof catechol 1, 2-dioxygenase from Rhodococcus sp. NCIM 2891. Research Journal of Environmental and Earth Sciences, 3(5),pp. 608-613.
[5] Rosenberg D. 1998. Methods for analyzing trend data. In: Analytic Methods in Maternal and Child Health. Editors: Handler, A, Rosenberg, D, Monahan, C, Kennelly, J. Washington DC: Maternal and Child Health Bureau, HRSA, DHHS, pp. 191–231.