Difference between revisions of "Part:BBa K847101:Design"
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===Design Notes===
 
===Design Notes===
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TBA
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The FliC gene codes for flagellin, a protein that arranges itself in a hollow cylinder to form the filament of a bacterial flagellum.  The N and C termini of flagellin and alpha-helices flanking the termini form the inner core of the filament cylinder (Bergman).  The central portion, or “dispensable region,” forms the outer surface of the filament, and is highly variable. 
  
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[http://2008.igem.org/Team:Slovenia iGEM Team Slovenia 2008] used the FliC gene to design a chimeric fusion protein expressing the antigenic segment of H. pylori on E. coli flagella ([https://parts.igem.org/wiki/index.php?title=Part:BBa_K133038 BBa_K133038]).  Our team wanted to use the same flagellar expression mechanism to express metal binding sequences, and our part is an improvement on the Slovenian biobrick.  In the process, we designed the FliC gene with a '''multiple cloning site (MCS)''' in the dispensable region so that any iGEM team can insert a protein to be expressed in the dispensable region.
  
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MCS has the following restriction sites:  BamHI, AvaII, BglII, HindIII, NdeI, PvuI, SphI, Xmal, SalI
  
 
===Source===
 
===Source===
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−
TBA
 
  
 
===References===
 
===References===
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Molly A. Bergman,Lisa A. Cummings,Robert C. Alaniz,Laura Mayeda,Ivana Fellnerova,Brad T. Cookson. CD4+-T-Cell Responses Generated during Murine Salmonella enterica Serovar Typhimurium Infection Are Directed towards Multiple Epitopes within the Natural Antigen FliC. 2005 Infect Immun. 73(11): 7226–7235

Latest revision as of 05:27, 3 October 2012

Engineered FliC with insertable expression region


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 611
    Illegal BamHI site found at 593
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 365
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The FliC gene codes for flagellin, a protein that arranges itself in a hollow cylinder to form the filament of a bacterial flagellum. The N and C termini of flagellin and alpha-helices flanking the termini form the inner core of the filament cylinder (Bergman). The central portion, or “dispensable region,” forms the outer surface of the filament, and is highly variable.

[http://2008.igem.org/Team:Slovenia iGEM Team Slovenia 2008] used the FliC gene to design a chimeric fusion protein expressing the antigenic segment of H. pylori on E. coli flagella (BBa_K133038). Our team wanted to use the same flagellar expression mechanism to express metal binding sequences, and our part is an improvement on the Slovenian biobrick. In the process, we designed the FliC gene with a multiple cloning site (MCS) in the dispensable region so that any iGEM team can insert a protein to be expressed in the dispensable region.

MCS has the following restriction sites: BamHI, AvaII, BglII, HindIII, NdeI, PvuI, SphI, Xmal, SalI

Source

References

Molly A. Bergman,Lisa A. Cummings,Robert C. Alaniz,Laura Mayeda,Ivana Fellnerova,Brad T. Cookson. CD4+-T-Cell Responses Generated during Murine Salmonella enterica Serovar Typhimurium Infection Are Directed towards Multiple Epitopes within the Natural Antigen FliC. 2005 Infect Immun. 73(11): 7226–7235