Difference between revisions of "Part:BBa K845000:Design"
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GFP comes from the protein comes from Aequorea victoria. This jellyfish uses GFP (Green Fluorescent Protein) in order to convert the blue luminescence emitted by the aequorine into a green luminescence. | GFP comes from the protein comes from Aequorea victoria. This jellyfish uses GFP (Green Fluorescent Protein) in order to convert the blue luminescence emitted by the aequorine into a green luminescence. | ||
| − | Aequorea victoria | + | Aequorea victoria is a jellyfish that can be found off the coast of north America. |
| + | pBAD usage in biology: http://www.univ-orleans.fr/sciences/BIOCHIMIE/L/Illustrations%20cours/SLO-5BC03%20Regulation%20expression%20genome/Procaryotes/SLO-5BC03-COURS3.pdf | ||
===References=== | ===References=== | ||
| + | http://www.univ-orleans.fr/sciences/BIOCHIMIE/L/Illustrations%20cours/SLO-5BC03%20Regulation%20expression%20genome/Procaryotes/SLO-5BC03-COURS3.pdf | ||
| + | |||
| + | Zaslaver, A., Bren, A., Ronen, M., Itzkovitz, S., Kikoin, I., Shavit, S., Liebermeister, W., et al (2006). A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nature Methods, 3(8), 623-628. doi:10.1038/nmeth895 | ||
| + | |||
| + | http://2012.igem.org/Team:Grenoble/Biology/AND_gate | ||
Latest revision as of 13:51, 30 September 2012
iGEM 2012 Grenoble Team proposes a new design and application to the pBAD promoter(paraBAD).
- 10INCOMPATIBLE WITH RFC[10]Illegal XbaI site found at 500
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 344
Illegal XhoI site found at 494 - 23INCOMPATIBLE WITH RFC[23]Illegal XbaI site found at 500
- 25INCOMPATIBLE WITH RFC[25]Illegal XbaI site found at 500
Illegal AgeI site found at 179
Illegal AgeI site found at 484 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 1169
Illegal SapI site found at 161
Design Notes
Design note: http://www.weizmann.ac.il/mcb/UriAlon/Papers/Zaslaver_Ecoli_library.pdf
Safety note: https://static.igem.org/mediawiki/2012/2/2a/ParaBAD-gfp.pdf
Source
The part comes from the plasmid collection Alon (http://www.weizmann.ac.il/mcb/UriAlon/Papers/Zaslaver_Ecoli_library.pdf). However, pBAD is a natural promoter in E. Coli. It regulates the production of three proteins (AraA, AraB and AraD) which form the arabinose operon. Their production enables the use of arabinose as a carbon source. It has six regulation sites, five of them are devoted to AraC fixation (three are repressing, one has a dual activity and one is an activator); the last one is a CRP binding site (positive activity). This promoter is activated when both activated CRP and AraC are bind to it.
GFP comes from the protein comes from Aequorea victoria. This jellyfish uses GFP (Green Fluorescent Protein) in order to convert the blue luminescence emitted by the aequorine into a green luminescence. Aequorea victoria is a jellyfish that can be found off the coast of north America.
pBAD usage in biology: http://www.univ-orleans.fr/sciences/BIOCHIMIE/L/Illustrations%20cours/SLO-5BC03%20Regulation%20expression%20genome/Procaryotes/SLO-5BC03-COURS3.pdf
References
http://www.univ-orleans.fr/sciences/BIOCHIMIE/L/Illustrations%20cours/SLO-5BC03%20Regulation%20expression%20genome/Procaryotes/SLO-5BC03-COURS3.pdf
Zaslaver, A., Bren, A., Ronen, M., Itzkovitz, S., Kikoin, I., Shavit, S., Liebermeister, W., et al (2006). A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nature Methods, 3(8), 623-628. doi:10.1038/nmeth895
http://2012.igem.org/Team:Grenoble/Biology/AND_gate