Difference between revisions of "Part:BBa K733003"
 
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<partinfo>BBa_K733003 short</partinfo>
 
<partinfo>BBa_K733003 short</partinfo>
  
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''ydcD'' has another name endB. This gene encodes a labile antidote –YdcD - for ''ydcE''''(ndoA)'' gene. YdcD can directly inhibit EndoA in vitro, so that the bacteria will not be vitiated under the expression of ''ydcE''.  (Pellegrini et al., 2005) For reasons why we include this gene in our cell growth inhibition device, please click:[https://parts.igem.org/Part:BBa_K733012 BBa_K733012].
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''ydcD'' has another name ''endB''. This gene encodes a labile antidote –YdcD - for ''ydcE(ndoA)'' gene. YdcD can directly inhibit EndoA in vitro, so that the bacteria will not be vitiated under low level expression of YdcE.  (Pellegrini et al., 2005) For reasons why we include this gene in our cell growth inhibition device, please click:[https://parts.igem.org/Part:BBa_K733012 BBa_K733012].
  
 
[[Image:YdcD.png]]
 
[[Image:YdcD.png]]
  
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<h3>Characterization by UCAS iGEM 2016 team</h3>
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This is we used the ydcD and ydcE genes to build a kill-switch.
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By measuring the growth curve of E. coli expressing the antitoxin and toxin, we showed that toxin EndoA can be effectively neutralized by its antitoxin EndoB.
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However, if the expression of EndoA is too strong (for example, induced by 5µg/mL aTc in our case), toxin will not be neutralized by antitoxin.
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We also characterized toxin ydcE, documented on the page:
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[https://parts.igem.org/Part:BBa_K733004 BBa_K733004]
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[[file:T--UCAS--ydcD1.png|500px]]
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In the figure above, toxin is induced at 0 min by 1.7µg/mL aTc, and antitoxin is induced by 8mM of IPTG after incubation for 4 hours.
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[[file:T--UCAS--ydcD2.png|500px]]
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In the figure above, toxin and antitoxin are both induced at 0 min.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
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==Reference==
 
==Reference==
  
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Pellegrini O, Mathy N, Gogos A, Shapiro L, and Condon C. "The'' Bacillus subtilis'' ydcDE operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor.." ''Molecular microbiology''. 56.5 (2005): 1139-1148. Print.
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Pellegrini O, Mathy N, Gogos A, Shapiro L, and Condon C. "The'' Bacillus subtilis'' ''ydcDE'' operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor.." ''Molecular microbiology''. 56.5 (2005): 1139-1148. Print.

Latest revision as of 02:02, 20 October 2016

RBS+ydcD: antitoxin gene

ydcD has another name endB. This gene encodes a labile antidote –YdcD - for ydcE(ndoA) gene. YdcD can directly inhibit EndoA in vitro, so that the bacteria will not be vitiated under low level expression of YdcE. (Pellegrini et al., 2005) For reasons why we include this gene in our cell growth inhibition device, please click:BBa_K733012.

YdcD.png

Characterization by UCAS iGEM 2016 team

This is we used the ydcD and ydcE genes to build a kill-switch. By measuring the growth curve of E. coli expressing the antitoxin and toxin, we showed that toxin EndoA can be effectively neutralized by its antitoxin EndoB. However, if the expression of EndoA is too strong (for example, induced by 5µg/mL aTc in our case), toxin will not be neutralized by antitoxin. We also characterized toxin ydcE, documented on the page: BBa_K733004

T--UCAS--ydcD1.png

In the figure above, toxin is induced at 0 min by 1.7µg/mL aTc, and antitoxin is induced by 8mM of IPTG after incubation for 4 hours.

T--UCAS--ydcD2.png

In the figure above, toxin and antitoxin are both induced at 0 min.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]



Reference

Pellegrini O, Mathy N, Gogos A, Shapiro L, and Condon C. "The Bacillus subtilis ydcDE operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor.." Molecular microbiology. 56.5 (2005): 1139-1148. Print.