Difference between revisions of "Part:BBa K782023"

 
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__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K782023 short</partinfo>
 
<partinfo>BBa_K782023 short</partinfo>
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* DNA binding sites for individual TAL effectors are indicated with square brackets [ ].
 +
  
 
===Introduction===
 
===Introduction===
Transcription activation like (TAL) effectors are DNA binding proteins with a high specifity, built from tandem repeats, with  near identical seqences, differing only in two amino acids in each repeat called “repeat variable diresidue” (RVD), which determine the specifity for a single nucleotide.(Scholze and Boch, 2011)
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Transcription activation like (TAL) effectors are DNA binding proteins with a high specifity, built from tandem repeats, with  near identical seqences, differing only in two amino acids in each repeat called “repeat variable diresidue” (RVD), which determine the specifity for a single nucleotide.(Scholze and Boch, 2011).
  
We designed our construct with 12 binding sites for [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782007 NicTAL] (as described [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782015 here], upstream of a CMV promoter (constitutive promoter for expression in mammalian cells). Downstream of the promoter we cloned fLuciferase (firefly luciferase) to function as a reporter.
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We designed our construct with 12 binding sites for [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782007 NicTAL] (as described [https://parts.igem.org/wiki/index.php?title=Part:BBa_K782015 here]), upstream of a CMV promoter (constitutive promoter for expression in mammalian cells). Downstream of the promoter we cloned fLuciferase (firefly luciferase) to function as a reporter.
  
 
[[Image:12×Nic_CMV_fLuc_shema1.png]]
 
[[Image:12×Nic_CMV_fLuc_shema1.png]]
  
'''Figure1:'''Schematic representation of our construct
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'''Figure 1:'''Schematic representation of our construct.
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===Characterisation===
 
===Characterisation===
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[[Image:12×Nic_CMV_fLuc_graf1.png]]
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[[Image:Svn_12_12N_Pcmv_fLUC.png]]
  
'''Figure 3:'''Testing repression of reporter luciferase gene. White column is showing constantly expressed reporter (fLuc), blue column is showing repression with NicTAL:KRAB.
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'''Figure 3:'''Testing repression of reporter luciferase gene. Light-blue column is showing constantly expressed reporter (fLuc), dark-blue column is showing repression of fLuc reporter with NicTAL:KRAB.
  
  
 
*fLuciferase was contributed by host lab
 
*fLuciferase was contributed by host lab
 
*Binding sites for TAL effectors were ordered from IDT.
 
*Binding sites for TAL effectors were ordered from IDT.
 +
  
 
==References==
 
==References==
Scholze, H., and Boch, J. (2011) TAL effectors are remote controls for gene activation. Curr. Opin. Microbiol. 14, 47-53
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Scholze, H., and Boch, J. (2011) TAL effectors are remote controls for gene activation. Curr. Opin. Microbiol. 14, 47-53.
  
  

Latest revision as of 22:06, 26 September 2012

12x[NicTAL] operator_CMV promoter_fLuciferase

  • DNA binding sites for individual TAL effectors are indicated with square brackets [ ].


Introduction

Transcription activation like (TAL) effectors are DNA binding proteins with a high specifity, built from tandem repeats, with near identical seqences, differing only in two amino acids in each repeat called “repeat variable diresidue” (RVD), which determine the specifity for a single nucleotide.(Scholze and Boch, 2011).

We designed our construct with 12 binding sites for NicTAL (as described here), upstream of a CMV promoter (constitutive promoter for expression in mammalian cells). Downstream of the promoter we cloned fLuciferase (firefly luciferase) to function as a reporter.

12×Nic CMV fLuc shema1.png

Figure 1:Schematic representation of our construct.


Characterisation

HEK293T cells were transfected with the 12x[NicTAL] operator_CMV promoter_fLuciferase reporter and NicTAL:KRAB (Figure 2). Tests showed, successful repression of fLuciferase with TAL repressor. Tests showed sucessful repression of the fLuciferase reporter (Figure 3).

12×Nic CMV fLuc shema2.png

Figure 2:Schematic representation of repression experiments. A: in the absence of a NicTAL:KRAB, fLuciferase is constituitively expressed. B: when a NicTAL:KRAB is present, it binds to its binding site upstream of the CMV promoter and represses transcription of fLuciferase with the KRAB domain.


Svn 12 12N Pcmv fLUC.png

Figure 3:Testing repression of reporter luciferase gene. Light-blue column is showing constantly expressed reporter (fLuc), dark-blue column is showing repression of fLuc reporter with NicTAL:KRAB.


  • fLuciferase was contributed by host lab
  • Binding sites for TAL effectors were ordered from IDT.


References

Scholze, H., and Boch, J. (2011) TAL effectors are remote controls for gene activation. Curr. Opin. Microbiol. 14, 47-53.




Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 658
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 1370
    Illegal NgoMIV site found at 2714
    Illegal NgoMIV site found at 2735
    Illegal NgoMIV site found at 3050
    Illegal AgeI site found at 210
    Illegal AgeI site found at 442
    Illegal AgeI site found at 2438
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 2620