Difference between revisions of "Part:BBa K819005"
 
(66 intermediate revisions by 4 users not shown)
Line 2: Line 2:
 
<partinfo>BBa_K819005 short</partinfo>
 
<partinfo>BBa_K819005 short</partinfo>
  
−
a fusion protein consisting of E.coli endogenous SOS system repressor LexA and fungus N.crass photosensor protein VVD with LexA carrying mutation at position 40-42 and VVD carrying mutation N56K, C71V and M135I. This part serves as an ultra sensitive photoreceptor(which can sense light as weak as moonlight) and will induce a light-dependent repression of genes with their promoter containing mutated 408 form of SOS box.
+
Lux operon genes (from [https://parts.igem.org/Part:BBa_K325909:Design BBa_K325909]) and related RBS are placed under T7 promoter (from [https://parts.igem.org/Part:BBa_I712074 BBa_I712074] ). Cells transformed with this part can produce blue luminescence while no exogenous substrate is needed.<br/><br/>
  
−
''Luminesensor'' is designed by following the general principle of optogenetics fusion protein design--attaching a physiologically functional domain to a photoreceptor domain.
+
When introducing synthetic DNA into a cell, it is desirable that the encoded processes be functionally distinct from host processes. Phage polymerases are a means to control orthogonal transcription and are one of the most used tools in genetic engineering. Specifically, T7 RNA polymerase (RNAP) has been shown to function in a variety of hosts, including most bacteria, plant chloroplasts and mammalian cells. One advantage of T7 promoter is low basal expression, for it tightly inactive in the absence of the polymerase.<br/><br/>
  
−
<html><a href="https://static.igem.org/mediawiki/2012/5/55/Peking2012_Design_illustration_of_general_principle_1.png"target="blank"><img src="https://static.igem.org/mediawiki/2012/5/55/Peking2012_Design_illustration_of_general_principle_1.png" width=350  ></a></html>
+
Therefore, T7 promoter separates sensing/circuitry functions from pathways/actuation. It is encoded in genetically distinct regions from other circuits, enabling its driving upon the expression of phage T7 polymerases. Luxbrick under T7 promoter is modular to form a interface between luxbrick and other systems. Also, when transformed into BL21 cells, it can be induced with IPTG to reach a high expression level. It is great improvement regarding time saving and cost efficiency.
  
−
'''FIG.1 The predicted structure based on the data of T7 polymerase'''
 
  
−
<!-- Add more about the biology of this part here
 
 
===Usage and Biology===
 
===Usage and Biology===
−
 
+
To note that the incubating temperature should be no higher than 30<sup>o</sup>C, or the heavy Lux complex can easily aggregate. Optimum incubating conditions provided by Peking iGEM 2012: 250 rpm, 22oC, good ventilation after induction(final concentration of IPTG: round 0.5 mM).
 +
BL21 cells harboring T7-lux operon induced with IPTG at 0.5 mM is shown in the photo<br/><br />
 +
<html>
 +
<img src="https://static.igem.org/mediawiki/parts/0/02/Peking2012_part_T7_lux_operon.png" style="width:200px;"/>
 +
<p></p>
 +
</html>
 +
<br/><br/>
 
<!-- -->
 
<!-- -->
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
−
<partinfo>BBa_K819005 SequenceAndFeatures</partinfo>
+
<partinfo>BBa_K819008 SequenceAndFeatures</partinfo>
  
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
−
<partinfo>BBa_K819005 parameters</partinfo>
+
<partinfo>BBa_K819008 parameters</partinfo>
 
<!-- -->
 
<!-- -->

Latest revision as of 14:06, 20 October 2012

Constitutive LuxBrick Generator

Lux operon genes (from BBa_K325909) and related RBS are placed under T7 promoter (from BBa_I712074 ). Cells transformed with this part can produce blue luminescence while no exogenous substrate is needed.

When introducing synthetic DNA into a cell, it is desirable that the encoded processes be functionally distinct from host processes. Phage polymerases are a means to control orthogonal transcription and are one of the most used tools in genetic engineering. Specifically, T7 RNA polymerase (RNAP) has been shown to function in a variety of hosts, including most bacteria, plant chloroplasts and mammalian cells. One advantage of T7 promoter is low basal expression, for it tightly inactive in the absence of the polymerase.

Therefore, T7 promoter separates sensing/circuitry functions from pathways/actuation. It is encoded in genetically distinct regions from other circuits, enabling its driving upon the expression of phage T7 polymerases. Luxbrick under T7 promoter is modular to form a interface between luxbrick and other systems. Also, when transformed into BL21 cells, it can be induced with IPTG to reach a high expression level. It is great improvement regarding time saving and cost efficiency.


Usage and Biology

To note that the incubating temperature should be no higher than 30oC, or the heavy Lux complex can easily aggregate. Optimum incubating conditions provided by Peking iGEM 2012: 250 rpm, 22oC, good ventilation after induction(final concentration of IPTG: round 0.5 mM). BL21 cells harboring T7-lux operon induced with IPTG at 0.5 mM is shown in the photo



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 3014
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 2012
    Illegal XhoI site found at 2842
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 4401
    Illegal BsaI.rc site found at 1410
    Illegal SapI.rc site found at 4726