Difference between revisions of "Part:BBa K649104:Experience"
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===Applications of BBa_K649104===
 
===Applications of BBa_K649104===
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We characterized BBa_K649104 and BBa_K117002 in lsrR(-) strain of E.coli.
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We characterized BBa_K649104 and BBa_K117002 in <i>lsrR</i>(-) strain of <i>E.coli</i>.
  
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[[Image:PlsrA2.png|thumb|center|600px|Fluorescence intensity of BBa_K649104 was much higher than that of promoterless-gfp(negative control).<br>Strain used in this assay lacks lsrR.<br>This work is done by Takuya Tsubaki.]]
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[[Image:PlsrA2.png|thumb|center|600px|Fluorescence intensity of BBa_K649104 was much higher than that of promoterless-gfp(negative control).<br>Strain used in this assay lacks <i>lsrR</i>.<br>This work is done by Takuya Tsubaki.]]
  
  
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PlsrA-<i>gfp</i> on pSB1A2(BBa_K649104)(JD22597)
 
PlsrA-<i>gfp</i> on pSB1A2(BBa_K649104)(JD22597)
  
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PlsrA-<i>gfp</i> on pSB1A2(BBa_K11702-<i>gfp</i>)(JD22597)
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PlsrA-<i>gfp</i> on pSB1A2(BBa_K117002-<i>gfp</i>)(JD22597)
  
 
JD22597 is a strain lacking <i>lsrR</i>.
 
JD22597 is a strain lacking <i>lsrR</i>.

Latest revision as of 15:18, 28 October 2011

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Applications of BBa_K649104

We characterized BBa_K649104 and BBa_K117002 in lsrR(-) strain of E.coli.

Fluorescence intensity of BBa_K649104 was much higher than that of promoterless-gfp(negative control).
Strain used in this assay lacks lsrR.
This work is done by Takuya Tsubaki.


Fluorescence intensity of our lsrA promoter-gfp(BBa_K649104) was much higher than that of promoterless-gfp(negative control), showing that our new lsrA promoter(BBa_K649100) works. In spite of no LsR repression, gene transcription does not take place sufficiently. On the other hand, fluorescence intensity of lsrA promoter-gfp((BBa_K117002)-(BBa_J54103)) was almost the same as promoterless-gfp(negative control), showing that lsrA promoter(BBa_K117002) does not work properly. Gene transcription takes place sufficiently. The difference between lsrA promoter(BBa_K117002) and lsrA promoter(BBa_K649100) is whether promoter contains CRP binding site or not. Our lsrA promoter(BBa_K649100) contains this site but lsrA promoter(BBa_K117002) does not. According to Wang(2005) et al, cAMP-CRP directly binds to the upstream of promoter and stimulates expression of the lsr operon.


…TGTGAtctattcgTCGGA…

CRP recognition sites are shown in capital letter.BBa_K649100 contains this sites.

The working part we created allow the use of AI-2 as a signaling molecule, which is a very powerful tool to build complex Synthetic Biology systems.

[sample]

Ptet-gfp on pSB1A2(JD22597)

Promoterless-gfp on pSB6A1(JD22597)

PlsrA-gfp on pSB1A2(BBa_K649104)(JD22597)

PlsrA-gfp on pSB1A2(BBa_K117002-gfp)(JD22597)

JD22597 is a strain lacking lsrR.

[Method]

1.Overnight cultures of reporter strains grown at 37°C in LB medium containing appropriate antibiotics were diluted 1:100 into 3 ml of LB medium and were incubated at 37°C as fresh cultures.

2. After their OD590 reached 0.15, the fresh cultures were diluted 1:100.

3. After 4-hour incubation at 37°C, 1 ml of each culture was moved to 1.6ml tube and its fluorescence intensity was measured with a flow cytometer.

After four hours from OD590 reaching 0.15, we measured OD.
This work is done by Takuya Tsubaki.

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