Difference between revisions of "Part:BBa K678063"
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− | pJEJAM15 is a plasmid that after digestion with NotI is intended to be transformed into ''Aspergillus nidulans'' and integrated into the genome by non-homologous end joining. The plasmid consists the strong constitutive ''gpdA'' promoter , mRFP with a nucleosomal targeting sequence | + | pJEJAM15 is a plasmid that after digestion with NotI is intended to be transformed into ''Aspergillus nidulans'' and integrated into the genome by non-homologous end joining. The plasmid consists the strong constitutive ''gpdA'' promoter , mRFP with a nucleosomal targeting sequence (NLS) fused to the C-terminus, the ''trpC'' terminator, a ''pyrG'' marker cassette for selection, an ori for propagation in ''E. coli'', and an ampR resistance cassette (Figure 1). |
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− | [[Image:Device_25.png|none|500px|thumb|<b>DTU-Denmark-2 2011</b> Figure 1: Plasmid map of | + | [[Image:Device_25.png|none|500px|thumb|<b>DTU-Denmark-2 2011</b> Figure 1: Plasmid map of pJEJAM15, the figure is not drawn to scale.]] |
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− | [[Image:25_dic_t_1_png.png|left| | + | Red fluorescence can be observed in clear spots in Figure 3. When comparing Figure 2 and FIgure 3 it can be seem that both spores and hyphae fluoresce. We assume that the fusion of mRFP1 with the NLS results in the targeting to the nucleus. To confirm that the mRFP1 in fact is targeted to the nucleus further experiments would have to be conducted. In figure 4 and figure 5 it be can see that the integration of the linearized pJEJAM15 must have impaired a gene or pathway of the transformant because its morphology and growth differed slightly from the [http://2011.igem.org/Team:DTU-Denmark-2/results/Proofofconcept/fungi#Wild%20type wild-type]. |
− | [[Image:NyRFP.jpg|right| | + | |
+ | [[Image:25_dic_t_1_png.png|left|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: Differential interference contrast image of ''Aspergillus nidulans'' with pJEJAM15.]] | ||
+ | [[Image:NyRFP.jpg|right|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: Fluorescence image of ''Aspergillus nidulans'' pJEJAM15.]] | ||
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− | [[Image:25.14_front_rettet.jpg|left| | + | [[Image:25.14_front_rettet.jpg|left|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Front]] |
− | [[Image:25.14_back_rettet.jpg|right| | + | [[Image:25.14_back_rettet.jpg|right|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Back]] |
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Latest revision as of 19:00, 27 September 2011
pJEJAM15
pJEJAM15 is a plasmid that after digestion with NotI is intended to be transformed into Aspergillus nidulans and integrated into the genome by non-homologous end joining. The plasmid consists the strong constitutive gpdA promoter , mRFP with a nucleosomal targeting sequence (NLS) fused to the C-terminus, the trpC terminator, a pyrG marker cassette for selection, an ori for propagation in E. coli, and an ampR resistance cassette (Figure 1).
Red fluorescence can be observed in clear spots in Figure 3. When comparing Figure 2 and FIgure 3 it can be seem that both spores and hyphae fluoresce. We assume that the fusion of mRFP1 with the NLS results in the targeting to the nucleus. To confirm that the mRFP1 in fact is targeted to the nucleus further experiments would have to be conducted. In figure 4 and figure 5 it be can see that the integration of the linearized pJEJAM15 must have impaired a gene or pathway of the transformant because its morphology and growth differed slightly from the [http://2011.igem.org/Team:DTU-Denmark-2/results/Proofofconcept/fungi#Wild%20type wild-type].
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal XbaI site found at 3747
Illegal XbaI site found at 5303
Illegal XbaI site found at 8047
Illegal PstI site found at 140
Illegal PstI site found at 2657
Illegal PstI site found at 4588 - 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 910
Illegal PstI site found at 140
Illegal PstI site found at 2657
Illegal PstI site found at 4588
Illegal NotI site found at 5260
Illegal NotI site found at 8086 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 144
Illegal BamHI site found at 3028
Illegal BamHI site found at 4326
Illegal XhoI site found at 700
Illegal XhoI site found at 1082
Illegal XhoI site found at 4186 - 23INCOMPATIBLE WITH RFC[23]Illegal XbaI site found at 3747
Illegal XbaI site found at 5303
Illegal XbaI site found at 8047
Illegal PstI site found at 140
Illegal PstI site found at 2657
Illegal PstI site found at 4588 - 25INCOMPATIBLE WITH RFC[25]Illegal XbaI site found at 3747
Illegal XbaI site found at 5303
Illegal XbaI site found at 8047
Illegal PstI site found at 140
Illegal PstI site found at 2657
Illegal PstI site found at 4588
Illegal NgoMIV site found at 3664
Illegal AgeI site found at 1289
Illegal AgeI site found at 1437 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 4379
Illegal BsaI.rc site found at 1116
Illegal BsaI.rc site found at 3378
Illegal SapI site found at 322