Difference between revisions of "Part:BBa K678063"

 
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<partinfo>BBa_K678063 short</partinfo>
 
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Device consists of RFP with a target signal to the nucleus which can explain the spots compared to the results from device and the spores with a single nuclei contains a lot of RFP signal. We cannot conclude that the signal is accumulated in the nucleus since they are not dyed, though can it be concluded that the RFP signal is target a specific place and accumulated somewhere.
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pJEJAM15 is a plasmid that after digestion with NotI is intended to be transformed into ''Aspergillus nidulans'' and integrated into the genome by non-homologous end joining. The plasmid consists the strong constitutive ''gpdA'' promoter , mRFP with a nucleosomal targeting sequence (NLS) fused to the C-terminus, the ''trpC'' terminator, a ''pyrG'' marker cassette for selection, an ori for propagation in ''E. coli'', and an ampR resistance cassette (Figure 1).  
 
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[[Image:Device_25.png|none|500px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ]]
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[[Image:Device_25.png|none|500px|thumb|<b>DTU-Denmark-2 2011</b> Figure 1: Plasmid map of pJEJAM15, the figure is not drawn to scale.]]
 
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[[Image:25_dic_t_1_png.png|left|300px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' with device DIC light.]]
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Red fluorescence can be observed in clear spots in Figure 3. When comparing Figure 2 and FIgure 3 it can be seem that both spores and hyphae fluoresce. We assume that the fusion of mRFP1 with the NLS results in the targeting to the nucleus. To confirm that the mRFP1 in fact is targeted to the nucleus further experiments would have to be conducted.  In figure 4 and figure 5 it be can see that the integration of the linearized pJEJAM15 must have impaired a gene or pathway of the transformant because its morphology and growth differed slightly from the [http://2011.igem.org/Team:DTU-Denmark-2/results/Proofofconcept/fungi#Wild%20type wild-type].
[[Image:25_RFP_3-tør_colour_-2.jpg|right|300px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' with device DIC light.]]
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[[Image:25_dic_t_1_png.png|left|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: Differential interference contrast image of ''Aspergillus nidulans'' with pJEJAM15.]]
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[[Image:NyRFP.jpg|right|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: Fluorescence image of ''Aspergillus nidulans'' pJEJAM15.]]
 
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[[Image:25.14_front_rettet.jpg|left|300px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Front]]
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[[Image:25.14_front_rettet.jpg|left|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Front]]
[[Image:25.14_back_rettet.jpg|right|300px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Back]]
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[[Image:25.14_back_rettet.jpg|right|440px|thumb|<b>DTU-Denmark-2 2011</b> Figure 2: ''Aspergillus nidulans'' Back]]
  
 
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Latest revision as of 19:00, 27 September 2011

pJEJAM15

pJEJAM15 is a plasmid that after digestion with NotI is intended to be transformed into Aspergillus nidulans and integrated into the genome by non-homologous end joining. The plasmid consists the strong constitutive gpdA promoter , mRFP with a nucleosomal targeting sequence (NLS) fused to the C-terminus, the trpC terminator, a pyrG marker cassette for selection, an ori for propagation in E. coli, and an ampR resistance cassette (Figure 1).

DTU-Denmark-2 2011 Figure 1: Plasmid map of pJEJAM15, the figure is not drawn to scale.



Red fluorescence can be observed in clear spots in Figure 3. When comparing Figure 2 and FIgure 3 it can be seem that both spores and hyphae fluoresce. We assume that the fusion of mRFP1 with the NLS results in the targeting to the nucleus. To confirm that the mRFP1 in fact is targeted to the nucleus further experiments would have to be conducted. In figure 4 and figure 5 it be can see that the integration of the linearized pJEJAM15 must have impaired a gene or pathway of the transformant because its morphology and growth differed slightly from the [http://2011.igem.org/Team:DTU-Denmark-2/results/Proofofconcept/fungi#Wild%20type wild-type].

DTU-Denmark-2 2011 Figure 2: Differential interference contrast image of Aspergillus nidulans with pJEJAM15.
DTU-Denmark-2 2011 Figure 2: Fluorescence image of Aspergillus nidulans pJEJAM15.


DTU-Denmark-2 2011 Figure 2: Aspergillus nidulans Front
DTU-Denmark-2 2011 Figure 2: Aspergillus nidulans Back


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal XbaI site found at 3747
    Illegal XbaI site found at 5303
    Illegal XbaI site found at 8047
    Illegal PstI site found at 140
    Illegal PstI site found at 2657
    Illegal PstI site found at 4588
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 910
    Illegal PstI site found at 140
    Illegal PstI site found at 2657
    Illegal PstI site found at 4588
    Illegal NotI site found at 5260
    Illegal NotI site found at 8086
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 144
    Illegal BamHI site found at 3028
    Illegal BamHI site found at 4326
    Illegal XhoI site found at 700
    Illegal XhoI site found at 1082
    Illegal XhoI site found at 4186
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal XbaI site found at 3747
    Illegal XbaI site found at 5303
    Illegal XbaI site found at 8047
    Illegal PstI site found at 140
    Illegal PstI site found at 2657
    Illegal PstI site found at 4588
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal XbaI site found at 3747
    Illegal XbaI site found at 5303
    Illegal XbaI site found at 8047
    Illegal PstI site found at 140
    Illegal PstI site found at 2657
    Illegal PstI site found at 4588
    Illegal NgoMIV site found at 3664
    Illegal AgeI site found at 1289
    Illegal AgeI site found at 1437
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 4379
    Illegal BsaI.rc site found at 1116
    Illegal BsaI.rc site found at 3378
    Illegal SapI site found at 322