Difference between revisions of "Part:BBa K592003"
 
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<br/>PcpcG2 is the green-light activated promoter from the genome of Synechocystis PCC6803. This 238 bp sequence is used by Jeffrey Tabor in pJT122 plasmid and contains the entire region upstream of cpcG2 and downstream of ccaR (Tabor et al. 2011). PcpcG2 is regulated by the light-activation of ccaS/ccaR. The gene downstream to this promoter is transcribed upon activation  by ccaS/ccaR, via green light. <br/>
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<p>Promoter cpcG2 is a 238bp green-light  activated promoter from the genome of Synechocystis PCC6803. We tested the  efficiency of the promoter by measuring the fluorescence of output sfGFP when  bacteria are illuminated with green, red or no light. (For more detail, please  view our wiki: <a href="http://2016.igem.org/Team:HZAU-China/Experiments" target="_blank">http://2016.igem.org/Team:HZAU-China/Experiments</a>)<br/>
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PcpcG2 is the green-light activated promoter from the genome of Synechocystis PCC6803. This 238 bp sequence is used by Jeffrey Tabor in pJT122 plasmid and contains the entire region upstream of cpcG2 and downstream of ccaR (Tabor et al. 2011). PcpcG2 is regulated by the light-activation of ccaS/ccaR. The gene downstream to this promoter is transcribed upon activation  by ccaS/ccaR, via green light.  
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<div style="text-align:left"><img alt="00.1" src="https://static.igem.org/mediawiki/parts/7/71/T--HZAU--China--CcaS-CcaR.jpg" style="float:none;width:400px;height:240px" ><br/>
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<span>&nbsp;<br/>
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</span><strong>Figure 1. Mechanism of CcaS-CcaR system<span>.</span></strong><span><span>&nbsp;<br/>
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<span>&nbsp;</span></span></span></span><span>CcaS is produced in a green-absorbing ground state, termed Pg. Absorption of green light flips CcaS to a kinase-active red-absorbing state (Pr) that phosphorylates the response regulator CcaR, which then binds to the G-box operator within cpcG2 promoter and activates transcription. Absorption of red light switches CcaS Pr back to Pg, which dephosphorylates P-CcaR, deactivating transcription.</span></div>
  
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References:
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Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)
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Cyanobacteriochrome CcaS is the green light receptor that induces the expression of
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phycobilisome linker protein. Proc Natl Acad Sci U S A 105: 9528-9533.
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<div style="text-align:left"><img alt="00.1" height="293" src="https://static.igem.org/mediawiki/parts/d/db/Hzau-china_cpcg2.jpg" style="float:none" width="480"></div>
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<p></p>
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<p><span style="font-weight:bold">Figure 2. Mean fluorescence output in CcaS-CcaR system</span><strong>.</strong></p>
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<p>&nbsp;<br/>
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<span>As is shown in the figure, in E.coli strain  JT2, PcpcG2 produces 266.0 ± 19.3 and 509.0 ± 55.4 au of sfGFP in red and green  light, corresponding to 1.91 ± 0.34-fold activation, demonstrating that PcpcG2  is functionally regulated by light, green-activated and red-repressed.</span></p>
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<p>&nbsp;</p>
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<p>However, the figure also shows that that  leaked expression is severe in dark surroundings. To better respond to red and  green light, we optimized the promoter by refactoring it and created an  innovative promoter, PcpcG2-172, with the truncation of a constitutive promoter  within the cpcG2 promoter (BBa_K2012015. For more detail, please view our wiki:  <a href="http://2016.igem.org/Team:HZAU-China/Experiments" target="_blank">http://2016.igem.org/Team:HZAU-China/Experiments</a>).<br/>
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<span><h2>References:</h2></span><br/>
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<span>1. Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proc Natl Acad Sci U S A 105: 9528-9533.<br/>
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2. Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). Multichromatic control of gene''expression in Escherichia coli. J. Mol. Biol. 405, 2, 315–324.<br/>
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3. Sebastian&nbsp;R.&nbsp;Schmidl,&nbsp;Ravi&nbsp;U.&nbsp;Sheth,&nbsp;Andrew&nbsp;Wu,&nbsp;and&nbsp;Jeffrey&nbsp;J.&nbsp;Tabor.&nbsp;Refactoring&nbsp;and&nbsp;Optimization&nbsp;of&nbsp;Light-Switchable&nbsp;Escherichia&nbsp;coli&nbsp;Two-Component&nbsp;Systems.&nbsp;ACS&nbsp;Synth.&nbsp;Biol.&nbsp;2014,&nbsp;3,&nbsp;820−831</span></p>
  
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Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). Multichromatic control of gene
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expression in Escherichia coli. J. Mol. Biol. 405, 2, 315–324.
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===Usage and Biology===
 
===Usage and Biology===
  

Latest revision as of 10:38, 17 October 2016

PcpcG2 promoter, ccaR-regulated
PcpcG2 is the green-light activated promoter from the genome of Synechocystis PCC6803. This 238 bp sequence is used by Jeffrey Tabor in pJT122 plasmid and contains the entire region upstream of cpcG2 and downstream of ccaR (Tabor et al. 2011). PcpcG2 is regulated by the light-activation of ccaS/ccaR. The gene downstream to this promoter is transcribed upon activation by ccaS/ccaR, via green light.

Promoter cpcG2 is a 238bp green-light activated promoter from the genome of Synechocystis PCC6803. We tested the efficiency of the promoter by measuring the fluorescence of output sfGFP when bacteria are illuminated with green, red or no light. (For more detail, please view our wiki: http://2016.igem.org/Team:HZAU-China/Experiments)

00.1
 
Figure 1. Mechanism of CcaS-CcaR system. 

 
 CcaS is produced in a green-absorbing ground state, termed Pg. Absorption of green light flips CcaS to a kinase-active red-absorbing state (Pr) that phosphorylates the response regulator CcaR, which then binds to the G-box operator within cpcG2 promoter and activates transcription. Absorption of red light switches CcaS Pr back to Pg, which dephosphorylates P-CcaR, deactivating transcription.

00.1

Figure 2. Mean fluorescence output in CcaS-CcaR system.

 
As is shown in the figure, in E.coli strain JT2, PcpcG2 produces 266.0 ± 19.3 and 509.0 ± 55.4 au of sfGFP in red and green light, corresponding to 1.91 ± 0.34-fold activation, demonstrating that PcpcG2 is functionally regulated by light, green-activated and red-repressed.

 

However, the figure also shows that that leaked expression is severe in dark surroundings. To better respond to red and green light, we optimized the promoter by refactoring it and created an innovative promoter, PcpcG2-172, with the truncation of a constitutive promoter within the cpcG2 promoter (BBa_K2012015. For more detail, please view our wiki: http://2016.igem.org/Team:HZAU-China/Experiments).

References:


1. Hirose Y, Shimada T, Narikawa R, Katayama M, Ikeuchi M (2008)Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proc Natl Acad Sci U S A 105: 9528-9533.
2. Tabor, J. J., Levskaya, A., and Voigt, C. A. (2011). Multichromatic control of gene''expression in Escherichia coli. J. Mol. Biol. 405, 2, 315–324.
3. Sebastian R. Schmidl, Ravi U. Sheth, Andrew Wu, and Jeffrey J. Tabor. Refactoring and Optimization of Light-Switchable Escherichia coli Two-Component Systems. ACS Synth. Biol. 2014, 3, 820−831


 









Usage and Biology

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]