Difference between revisions of "Part:BBa K590021"
 
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===Usage and Biology===
 
===Usage and Biology===
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To test BBa _K590021, it was inserted into a pET29b+ vector using [http://2011.igem.org/Team:Washington/Protocols/Kunkel Kunkel Mutagenesis]. Kumamolisin-As was then produced and purified as described in the [http://2011.igem.org/Team:Washington/Protocols/50mL_UW 2011 iGEM Team's Small Scale Protein Expression and Purification Protocol]. The purified protein was then tested for activity. For a detailed description of the assay, please see the [http://2011.igem.org/Team:Washington/Protocols/Purified_Enzyme_Assay 2011 UW iGEM Purified Enzyme Assay Protocol]. The resulting data is shown below.
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This part was constructed by the [http://2011.igem.org/Team:Washington 2011 University of Washington] iGEM team to break down gluten, the primary cause of Celiac's disease.   To test BBa _K590021, it was inserted into a protein expression vector, pET29b+.  Kumamolisin-As was then produced and purified as described in the [http://2011.igem.org/Team:Washington/Protocols/50mL_Scale 2011 iGEM Team's Small Scale Protein Expression and Purification Protocol]. The purified protein was then tested for activity. For a detailed description of the assay, please see the [http://2011.igem.org/Team:Washington/Protocols/Purified_Enzyme_Assay 2011 UW iGEM Purified Enzyme Assay Protocol]. The resulting data is shown below.
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[[Image:Washington InitialKumavSC.png|left|500px|thumb|The relative activity plot was produced by measuring the quantity of PQLP peptide cleaved per enzyme per hour. Error bars represent a 95% confidence interval using the t-distribution from triplicate data.]]
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{| {{table}}
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| align="center" style="background:#f0f0f0;"|'''Mutation(s)'''
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| align="center" style="background:#f0f0f0;"|'''''k<sub>cat</sub>''/''K<sub>M</sub>'' (M<sup>-1</sup> s<sup>-1</sup>)'''
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|-
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| [https://parts.igem.org/wiki/index.php?title=Part:BBa_K590023 '''N291D''']||(5.21 ± 0.11) x 10<sup>5</sup>
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|-
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| [https://parts.igem.org/wiki/index.php?title=Part:BBa_K590024 '''S354N, D358G, D368H''']||(2.45 ± 0.02) x 10<sup>5</sup>
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|-
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| [https://parts.igem.org/wiki/index.php?title=Part:BBa_K590022 '''G319S, D358G, D368H''']||(2.02 ± 0.02) x 10<sup>5</sup>
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|-
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| [https://parts.igem.org/wiki/index.php?title=Part:BBa_K590087 '''G319S, D358G, D368H, N291D (KumaMax)''']||(3.86 ± 0.04) x 10<sup>6</sup>
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|-
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| [https://parts.igem.org/wiki/index.php?title=Part:BBa_K590021 '''wt-Kumamolisin''']||(3.25 ± 0.05) x 10<sup>4</sup>
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|-
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| SC-PEP ||(4.96 ± 0.75) x 10<sup>3</sup>
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|-
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|}
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[[Image:Washington_Kumamolisin-As_Graph.png|750px|center|thumb|The relative activity plot was produced by measuring the quantity of PQLP peptide cleaved per enzyme per hour.]]
 
  
 
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Latest revision as of 06:26, 1 November 2011

Kumamolisin-As

An enzyme from the sedolisin family native to Alicyclobacillus sendaiensis with known collagenase activity at low pH and elevated temperatures.

Usage and Biology

This part was constructed by the [http://2011.igem.org/Team:Washington 2011 University of Washington] iGEM team to break down gluten, the primary cause of Celiac's disease. To test BBa _K590021, it was inserted into a protein expression vector, pET29b+. Kumamolisin-As was then produced and purified as described in the [http://2011.igem.org/Team:Washington/Protocols/50mL_Scale 2011 iGEM Team's Small Scale Protein Expression and Purification Protocol]. The purified protein was then tested for activity. For a detailed description of the assay, please see the [http://2011.igem.org/Team:Washington/Protocols/Purified_Enzyme_Assay 2011 UW iGEM Purified Enzyme Assay Protocol]. The resulting data is shown below.

The relative activity plot was produced by measuring the quantity of PQLP peptide cleaved per enzyme per hour. Error bars represent a 95% confidence interval using the t-distribution from triplicate data.
Mutation(s) kcat/KM (M-1 s-1)
N291D (5.21 ± 0.11) x 105
S354N, D358G, D368H (2.45 ± 0.02) x 105
G319S, D358G, D368H (2.02 ± 0.02) x 105
G319S, D358G, D368H, N291D (KumaMax) (3.86 ± 0.04) x 106
wt-Kumamolisin (3.25 ± 0.05) x 104
SC-PEP (4.96 ± 0.75) x 103








Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 1696
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 447
    Illegal NgoMIV site found at 720
    Illegal NgoMIV site found at 1248
    Illegal NgoMIV site found at 1494
    Illegal AgeI site found at 772
    Illegal AgeI site found at 1348
    Illegal AgeI site found at 1588
  • 1000
    COMPATIBLE WITH RFC[1000]