Difference between revisions of "Part:BBa K523001"

Latest revision as of 19:53, 18 September 2011

RBS + malS (E. coli periplasmic α-amylase)

E. coli periplasmic α-amylase gene malS (see [http://www.ncbi.nlm.nih.gov/nuccore/48994873?from=3735520&to=3737550&report=gbwithparts info from GenBank: U00096.2]).

The native ribosome binding site is present.

The part was made using the strategy outlined in BBa_K523000, and therefore contains 4 extra bases at the 5' end which generate a BglII restriction site.

Usage and Biology

While an amylase ought to be capable of degrading starch, the product protein is believed to be periplasmic and thus ought to only degrade starch if it leaks from the periplasm in significant quantities. Its natural function in E. coli presumably involves degrading shorter glucose chains: [http://dx.doi.org/10.1128/JB.00767-08 Lengsfeld et al (2008)] state that "MalS produces preferentially maltohexaose from longer maltodextrins in the periplasm".

Other interesting and useful facts about the MalS protein can be found in [http://dx.doi.org/10.1074/jbc.272.35.22125 Spiess et al (1997)].

The SignalP program predicts that a 17 amino acid localisation signal (at the N terminal) is cleaved off before the protein reaches its mature form.

Edinburgh 2011 carried out some experiments on this part under the control of the lac promoter - see details at part BBa_K523006.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 1233
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 369
Illegal AgeI site found at 1534
1000
COMPATIBLE WITH RFC[1000]

@@ Line 2: / Line 2: @@
 <partinfo>BBa_K523001 short</partinfo>
-This is the ''E. coli'' amylase gene ''malS''. The part contains the native Ribosome Binding Site.
+''E. coli'' periplasmic &alpha;-amylase gene ''malS'' (see [http://www.ncbi.nlm.nih.gov/nuccore/48994873?from=3735520&to=3737550&report=gbwithparts info from GenBank: U00096.2]).
+The native ribosome binding site is present.
 The part was made using the strategy outlined in <partinfo>BBa_K523000</partinfo>, and therefore contains 4 extra bases at the 5' end which generate a BglII restriction site.
@@ Line 8: / Line 10: @@
 ===Usage and Biology===
-The product protein is believed to be periplasmic and thus may not actually be capable of degrading starch, unless it leaks from the periplasm in significant quantities. Its natural function in ''E. coli'' presumably involves degrading shorter glucose chains.
+While an amylase ought to be capable of degrading starch, the product protein is believed to be periplasmic and thus ought to only degrade starch if it leaks from the periplasm in significant quantities. Its natural function in ''E. coli'' presumably involves degrading shorter glucose chains: [http://dx.doi.org/10.1128/JB.00767-08 Lengsfeld ''et al'' (2008)] state that "MalS produces preferentially maltohexaose from longer maltodextrins in the periplasm".
+Other interesting and useful facts about the MalS protein can be found in [http://dx.doi.org/10.1074/jbc.272.35.22125 Spiess ''et al'' (1997)].
 The SignalP program predicts that a 17 amino acid localisation signal (at the N terminal) is cleaved off before the protein reaches its mature form.
-<span class='h3bb'>Sequence and Features</span>
+<font color="red">Edinburgh 2011 carried out some experiments on this part under the control of the lac promoter - see details at part <partinfo>BBa_K523006</partinfo>.</font>
+<span class='h3bb'>'''Sequence and Features'''</span>
 <partinfo>BBa_K523001 SequenceAndFeatures</partinfo>