Difference between revisions of "Part:BBa K404206"

 
(12 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K404206 short</partinfo>
 
<partinfo>BBa_K404206 short</partinfo>
 +
{| style="color:black" cellpadding="6" cellspacing="1" border="2" align="left"
 +
! colspan="2" style="background:#66bbff;"|[https://parts.igem.org/Part:BBa_K404206 ViralBrick-587-His-TAg]
 +
|-
 +
|'''BioBrick Nr.'''
 +
|[https://parts.igem.org/Part:BBa_K404165 BBa_K404206]
 +
|-
 +
|'''RFC standard'''
 +
|[https://parts.igem.org/Help:Assembly_standard_25 RFC 25]
 +
|-
 +
|'''Requirement'''
 +
|pSB1C3<br>
 +
|-
 +
|'''Source'''
 +
|
 +
|-
 +
|'''Submitted by'''
 +
|[http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]
 +
|}
 +
<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/>
 +
<br><b>The His affinity tag motif, ready for insertion into the 587 loop</b><br>
  
 
[[Image:Freiburg10_ViralBrick-logo-587-His.png|thumb|center|480px]]<br>
 
[[Image:Freiburg10_ViralBrick-logo-587-His.png|thumb|center|480px]]<br>
<!-- Add more about the biology of this part here
+
<!-- Add more about the biology of this part here -->
 
===Usage and Biology===
 
===Usage and Biology===
 +
 +
<div style="width:965px; height:400px; ">
 +
<div style="float:left; width:460px; height:auto;  margin: 0px 5px 0px 5px; text-align:justify;">
 +
Protein tagging via Histidine Tags  is a widely used method for protein purification: Multiple histidine residues (most commonly: Six) are being fused tot he end of the targeting protein.<br>
 +
The high binding affinity of Histidine towards metal is being exploited for the purification of proteins via the so called „Immobilized Metal Ion Affinity Chromatography“ (IMAC): Multiple histidine residues (most commonly: Six) are being fused to the end of the targeting protein. A cell extract containing the recombinant protein ist then applied to a collumn containing immobilized  Ni2+-Ions. The His-tags covalently bind the Ni-Ions while other cellular proteins can be washed oft he collumn. The purified proteins can then be eluted with Imidazol, which displaces the histidine residues.(Smith et al. 1988), (Hoffmann & Roeder 1991)<br>
 +
Since the aim behind engineering therapeutic AAV vectors is a safe administration to human patients, it is important to consider a convenient way of purifying the virus particles. Contamination by cellular proteins could cause toxic side effects or a strong immune response. Koerber et al. have first inserted a His-tag into a surface-exposed loop at amino acid position 587 in the Cap protein and successfully purified recombinant virsuses using IMAC (Koerber et al. 2007). For our Virus Construction Kit, we provide the His-tag motif in the ViralBrick standard, allowing for an easy insertion into the 453 and/or 587 loop. If the modified capsid bearing a His-tag is being cotransfected  with a wild type capsid for the production of mosaic viruses, IMAC helps to not only purify the produced viral particles but also to enrich particles which actually contain the modified proteins.    <br>
 +
 +
</div>
 +
 +
<html><div style="float:right; width:480px; height:auto; "><img src="https://static.igem.org/mediawiki/parts/5/59/Freiburg10_ViralBrick_motif_His.png" width="460"
 +
height="auto"/></div></div><br><br><br><br></html>
 +
 +
===Restriction sites===
 +
 +
<table border="1" style="float:right; width:480px; height:auto;>
 +
<tr>
 +
  <th><b>Restriction site</b></th>
 +
  <th><b>Enzyme</b></th>
 +
  <th><b>Recognition sequence</b></th>
 +
  <th><b>Activity</b></th>
 +
  <th><b>Temp.</b></th>
 +
</tr>
 +
<tr>
 +
  <td>upstream 587</td>
 +
  <td>[http://www.neb.com/nebecomm/products/productR3136.asp BamHI-HF]</td>
 +
  <td>[[image:Freiburg10_recognition site BamHI-HF.Gif]]</td>
 +
  <td>100;50;10;100</td>
 +
  <td>37°C</td>
 +
</tr>
 +
<tr>
 +
  <td>downstream 587</td>
 +
  <td>[http://www.neb.com/nebecomm/products/productR3151.asp PvuII-HF]</td>
 +
  <td>[[image:Freiburg10_recognition site PvuII-HF.Gif]]</td>
 +
  <td>0;25;0;100</td>
 +
  <td>37°C
 +
</tr>
 +
<tr>
 +
</table>
  
 
<!-- -->
 
<!-- -->

Latest revision as of 02:23, 28 October 2010

ViralBrick-587-His-Tag

ViralBrick-587-His-TAg
BioBrick Nr. BBa_K404206
RFC standard RFC 25
Requirement pSB1C3
Source
Submitted by [http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]















The His affinity tag motif, ready for insertion into the 587 loop

Freiburg10 ViralBrick-logo-587-His.png

Usage and Biology

Protein tagging via Histidine Tags is a widely used method for protein purification: Multiple histidine residues (most commonly: Six) are being fused tot he end of the targeting protein.
The high binding affinity of Histidine towards metal is being exploited for the purification of proteins via the so called „Immobilized Metal Ion Affinity Chromatography“ (IMAC): Multiple histidine residues (most commonly: Six) are being fused to the end of the targeting protein. A cell extract containing the recombinant protein ist then applied to a collumn containing immobilized Ni2+-Ions. The His-tags covalently bind the Ni-Ions while other cellular proteins can be washed oft he collumn. The purified proteins can then be eluted with Imidazol, which displaces the histidine residues.(Smith et al. 1988), (Hoffmann & Roeder 1991)
Since the aim behind engineering therapeutic AAV vectors is a safe administration to human patients, it is important to consider a convenient way of purifying the virus particles. Contamination by cellular proteins could cause toxic side effects or a strong immune response. Koerber et al. have first inserted a His-tag into a surface-exposed loop at amino acid position 587 in the Cap protein and successfully purified recombinant virsuses using IMAC (Koerber et al. 2007). For our Virus Construction Kit, we provide the His-tag motif in the ViralBrick standard, allowing for an easy insertion into the 453 and/or 587 loop. If the modified capsid bearing a His-tag is being cotransfected with a wild type capsid for the production of mosaic viruses, IMAC helps to not only purify the produced viral particles but also to enrich particles which actually contain the modified proteins.





Restriction sites

Restriction site Enzyme Recognition sequence Activity Temp.
upstream 587 [http://www.neb.com/nebecomm/products/productR3136.asp BamHI-HF] Freiburg10 recognition site BamHI-HF.Gif 100;50;10;100 37°C
downstream 587 [http://www.neb.com/nebecomm/products/productR3151.asp PvuII-HF] Freiburg10 recognition site PvuII-HF.Gif 0;25;0;100 37°C

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 10
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]