Difference between revisions of "Part:BBa K404232"

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__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K404232 short</partinfo>
 
<partinfo>BBa_K404232 short</partinfo>
<br><b>The RGD integrin binding motif including a knockout of the natural HSPG tropism, inserted into the 453 loop of [[Part:BBa_K404003|[AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless]]</b>
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<br><b>The RGD integrin binding motif including a knockout of the natural HSPG tropism, inserted into the 587 loop of [[Part:BBa_K404003|[AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless]]</b>
  
 
[[Image:Freiburg10_Rep-VP123_P5-TATA-less 587KO-RGD.png|thumb|center|480px]]<br>
 
[[Image:Freiburg10_Rep-VP123_P5-TATA-less 587KO-RGD.png|thumb|center|480px]]<br>

Revision as of 22:23, 25 October 2010

[AAV2]-Rep-VP123_P5-TATAless (ViralBrick-587KO-RGD)
The RGD integrin binding motif including a knockout of the natural HSPG tropism, inserted into the 587 loop of [AAV2]-Rep-VP123(ViralBrick-587KO-empty)_p5-TATAless

Freiburg10 Rep-VP123 P5-TATA-less 587KO-RGD.png

Usage and Biology

Integrins are transmembrane proteins that, among other functions, mediate cell attachment to surrounding tissues. They bind to a motif consisting of the amino acids arginine, glycine and aspartic acid (RGD in one-letter code). Because Integrin is highly expressed in many tumor cell lines (Albelda et al., 1990), (Damjanovich, Albelda, Mette, & Buck, 1992), (Lessey et al., 1995), (Smythe, LeBel, Bavaria, Kaiser, & Albelda, 1995), (Gladson & Cheresh, 1991), AAV particles displaying the RGD motif on various positions in their capsid proteins have been created by (Shi et al., 2003). Particles displaying RGD at amino acid positions 584 & 588 as well as 453 or 587 (Boucas et al., 2009) showed transduction efficiencies similar to wt AAV, even when the cells’ HSPG receptors were blocked by heparin sulfate or when the natural HSPG binding motif on the capsid surface was knocked out. To further broaden the area of therapeutic application, we created a ViralBrick containing the RGD motive to specifically target cells with low HSPG-/high Integrin expression.

Freiburg10_ViralBrick_motif_RGD.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 3611
    Illegal XhoI site found at 1913
    Illegal XhoI site found at 2099
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 4179
    Illegal BsaI site found at 4361
    Illegal BsaI site found at 4398
    Illegal SapI site found at 3048