Difference between revisions of "Part:BBa J70565:Design"

(→‎Design Notes)
(→‎Design Notes)
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Primer for correction of the missing SpeI site:
 
Primer for correction of the missing SpeI site:
−
  cgtactgcagcggccgctactagta ttattaggtatattccatgtggtacttc,LuxB-R
+
  cgtactgcagcggccgctactagtat tattaggtatattccatgtggtacttc,LuxB-R
  
 
===Source===
 
===Source===

Revision as of 20:48, 30 March 2010

luxAB Fusion gene, Xenorhabdus luminescens


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 530
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 1049


Design Notes

A 10 amino Gly-Ser linker was chosen to maintain functionality of the dimer, but this was fairly arbitrary and the length of the intervening linker may need to be changed.

Additionally, a missence mutation occurred during amplification of K216008, in which nucleotide 1393 and 1394 (numbers refer to part BBaJ70565's sequence) were switched causing the sequence to read cctgtccgcata instead of cctgtcccgata. This mutation caused a single Alanine to be changed to an Arginine, which shouldn't be too much of a problem.


Primers for insertion of the linker region: 

accagacccaccaccacctgaacctcctcc taatagcgaacgttgtttttc,LuxA-R
ggt tca ggt ggt ggt ggg tct ggt gga gga tcg aaatttggattgttcttcc,LuxB-F

Primer for correction of the missing SpeI site: 

cgtactgcagcggccgctactagtat tattaggtatattccatgtggtacttc,LuxB-R

Source

Amplified from part K216008.

References