Difference between revisions of "Part:BBa K5401000"
 
(2 intermediate revisions by the same user not shown)
Line 3: Line 3:
 
<partinfo>BBa_K5401000 short</partinfo>
 
<partinfo>BBa_K5401000 short</partinfo>
  
−
High-copy number plasmid encoding for enhanced cyan fluorescent protein (eCFP) under T7 Promoter.  
+
High-copy number plasmid encoding for enhanced cyan fluorescent protein (eCFP) under T7 Promoter. The plasmid was utilised as part of a reporter system to evaluate the efficiency of T7 RNA polymerase and its variants. The plasmid was constructed using ligation from the following parts found in the iGEM Registry:
−
 
+
• BBa_J428353 - pJUMP28-1A(sfGFP)
−
The plasmid was utilised as part of a reporter system to evaluate the efficiency of T7 RNA polymerase and its variants.
+
• BBa_K3457003 - T7 Promoter
 +
• BBa_J428032 - Ribosomal Binding Site (RBS)
 +
• BBa_E0020 - eCFP
 +
• BBa_J428091 - T7Terminator
  
 
<!-- Add more about the biology of this part here -->
 
<!-- Add more about the biology of this part here -->
 
===Usage and Biology===
 
===Usage and Biology===
−
T7 RNA Polymerase is a RNA polymerase derived from the T7 bacteriophage. It shows very high transcriptional activity, and is very specific to its cognate promoter: 5'-TAATACGACTCACTATAGG-3'. T7 RNA Polymerase is widely utilised in the field of biotechnology, such as in areas of in vivo protein expression and in vitro transcription.
+
T7 RNA Polymerase (T7RNAP) is a RNA polymerase derived from the T7 bacteriophage. It shows very high transcriptional activity, and is very specific to its cognate promoter: 5'-TAATACGACTCACTATAGG-3'. T7 RNA Polymerase is widely utilised in the field of biotechnology, such as in areas of in vivo protein expression and in vitro transcription.
−
 
+
−
The main purpose of this plasmid serves as a reporter, to evaluate the efficiency of the T7 RNA polymerase and other generated variants.
+
  
 +
The main purpose of this plasmid is to serve as a reporter system, to evaluate the efficiency of the T7 RNA polymerase and other generated variants. It was used in conjuction with other reporter plasmids: C1 (BBa_K5401000; pUC_T7Promoter_eCFP) , C2 (BBa_K5401001; pBRR322_T7Promoter_eCFP), C3(BBa_K5401002; p15A_T7Promoter_eCFP)
  
 
===Characterization===
 
===Characterization===
−
The plasmid is first transformed into BL21 (DE3) E. coli cells, followed by colony PCR to confirm the successful transformation. A single colony is then inoculated for further culturing for IPTG induction. While initial results indicate that fluorescence was observed, further sub-culturing has resulted in the loss of fluorescence.
+
The plasmid was first transformed into BL21 (DE3) E. coli cells, followed by colony PCR to confirm the successful transformation. A single colony was then inoculated for further culturing for IPTG induction. While initial results showed that fluorescence was observed, further sub-culturing has resulted in the loss of fluorescence due to a mutation found within the coding sequence of the T7RNAP.
 +
 
 +
A quantitative analysis of our reporter systems was also performed to further corroborate their functionality. A similar IPTG induction protocol was followed, where bacterial cultures were induced with IPTG and incubated at 37°C for 2 hours. Our quantitative results corroborate our previous qualitative analysis, where only fluorescence was observed in IPTG-induced BL21 (DE3) cells harbouring plasmid C2 or C3.
  
 
<html>
 
<html>
Line 25: Line 29:
 
       </div>
 
       </div>
 
</html>
 
</html>
−
 
  
 
<!-- -->
 
<!-- -->

Latest revision as of 15:42, 1 October 2024


pUC_T7Promoter_eCFP

High-copy number plasmid encoding for enhanced cyan fluorescent protein (eCFP) under T7 Promoter. The plasmid was utilised as part of a reporter system to evaluate the efficiency of T7 RNA polymerase and its variants. The plasmid was constructed using ligation from the following parts found in the iGEM Registry: • BBa_J428353 - pJUMP28-1A(sfGFP) • BBa_K3457003 - T7 Promoter • BBa_J428032 - Ribosomal Binding Site (RBS) • BBa_E0020 - eCFP • BBa_J428091 - T7Terminator

Usage and Biology

T7 RNA Polymerase (T7RNAP) is a RNA polymerase derived from the T7 bacteriophage. It shows very high transcriptional activity, and is very specific to its cognate promoter: 5'-TAATACGACTCACTATAGG-3'. T7 RNA Polymerase is widely utilised in the field of biotechnology, such as in areas of in vivo protein expression and in vitro transcription.

The main purpose of this plasmid is to serve as a reporter system, to evaluate the efficiency of the T7 RNA polymerase and other generated variants. It was used in conjuction with other reporter plasmids: C1 (BBa_K5401000; pUC_T7Promoter_eCFP) , C2 (BBa_K5401001; pBRR322_T7Promoter_eCFP), C3(BBa_K5401002; p15A_T7Promoter_eCFP)

Characterization

The plasmid was first transformed into BL21 (DE3) E. coli cells, followed by colony PCR to confirm the successful transformation. A single colony was then inoculated for further culturing for IPTG induction. While initial results showed that fluorescence was observed, further sub-culturing has resulted in the loss of fluorescence due to a mutation found within the coding sequence of the T7RNAP.

A quantitative analysis of our reporter systems was also performed to further corroborate their functionality. A similar IPTG induction protocol was followed, where bacterial cultures were induced with IPTG and incubated at 37°C for 2 hours. Our quantitative results corroborate our previous qualitative analysis, where only fluorescence was observed in IPTG-induced BL21 (DE3) cells harbouring plasmid C2 or C3.

Fig 1: Quantification of relative fluorescence intensity for all three reporter systems. From left to right, C1(-IPTG), C1(+IPTG), C2(-IPTG), C2(+IPTG), C3(-IPTG) and C3(+IPTG) [LEFT] Replicate 1; n=8 technical replicates. [CENTER] Replicate 2; n=6 technical replicates. [RIGHT] Replicate 3; n=6 technical replicates.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found in sequence at 2492
    Illegal suffix found in sequence at 16
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 2492
    Illegal SpeI site found at 17
    Illegal PstI site found at 31
    Illegal NotI site found at 24
    Illegal NotI site found at 2498
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 2492
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found in sequence at 2492
    Illegal suffix found in sequence at 17
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 2492
    Illegal XbaI site found at 2507
    Illegal SpeI site found at 17
    Illegal PstI site found at 31
    Illegal NgoMIV site found at 1390
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 2188