Difference between revisions of "Part:BBa K5439006"
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To create an biosensor capable of detecting the anti-inflammatory drug ibuprofen, the FRET-based sensor system [https://parts.igem.org/Part:BBa_K1907000 (BBa_K4447004)] that we propose by changing the gene[https://parts.igem.org/Part:BBa_K1907000 (BBa_K4447001)], for the gene[https://parts.igem.org/Part:BBa_K5439005 (BBa_K5439005)]. By changing the genes, our composite part can detect ibuprofen from water bodies. Ibuprofen is an anti-inflammatory treatment drug widely used in the world that can be bought without any necessary prescription. This makes ibuprofen a drug that everyone can consume easily, bringing problems because its disposal makes it an emerging contaminant in water bodies (Jan-Roblero, J., & Cruz-Maya, J. A., 2023). FRET (fluorescence resonance energy transfer) is a biosensor technique that detects biomolecules without modifying them. It relies on the proximity of fluorophore molecules to trigger fluorescence. This non-radiative process allows for sensitive and specific detection of environmental changes and biomolecule interactions. FRET biosensors are safe and versatile, able to detect protein-protein interactions, pH changes, enzyme activity, and more. They provide a reliable means of monitoring various biomolecular activities without the need for genetic modifications, making them valuable tools in research and diagnostics (Kumar-Verma, A., <i>et al.</i>, 2023). | To create an biosensor capable of detecting the anti-inflammatory drug ibuprofen, the FRET-based sensor system [https://parts.igem.org/Part:BBa_K1907000 (BBa_K4447004)] that we propose by changing the gene[https://parts.igem.org/Part:BBa_K1907000 (BBa_K4447001)], for the gene[https://parts.igem.org/Part:BBa_K5439005 (BBa_K5439005)]. By changing the genes, our composite part can detect ibuprofen from water bodies. Ibuprofen is an anti-inflammatory treatment drug widely used in the world that can be bought without any necessary prescription. This makes ibuprofen a drug that everyone can consume easily, bringing problems because its disposal makes it an emerging contaminant in water bodies (Jan-Roblero, J., & Cruz-Maya, J. A., 2023). FRET (fluorescence resonance energy transfer) is a biosensor technique that detects biomolecules without modifying them. It relies on the proximity of fluorophore molecules to trigger fluorescence. This non-radiative process allows for sensitive and specific detection of environmental changes and biomolecule interactions. FRET biosensors are safe and versatile, able to detect protein-protein interactions, pH changes, enzyme activity, and more. They provide a reliable means of monitoring various biomolecular activities without the need for genetic modifications, making them valuable tools in research and diagnostics (Kumar-Verma, A., <i>et al.</i>, 2023). | ||
+ | |||
+ | =Characterization= | ||
+ | |||
+ | ==Gene Aplification, Gibson Assembly and Transformation== | ||
+ | |||
+ | ==Restriction Enzyme Digestion and Ligation== | ||
+ | |||
+ | Finally, as a confirmation step, we performed minipreps on colonies from all 3 constructs and digested the plasmid using NcoI and XhoI enzymes, in order to ensure the transformed colonies contained the interest plasmid with the full construct (Figure X). | ||
+ | |||
+ | ==Protein Expression== | ||
+ | |||
+ | ==Validation of our assembled FRET systems ECFP_IpfF_mVENUs== | ||
=References= | =References= |
Revision as of 01:42, 1 October 2024
FRET-based system for the detection of ibuprofen
FRET-based sensor system for the detection of ibuprofen that consists of long-chain fatty acid CoA ligase from Sphingomonas spp.(BBa_K5439005),an enzyme that catalyzes the conversion of ibuprofen into isobutylcatechol, flanked by two fluorescent proteins: ECFP(BBa_K1159302)as energy donor and mVenus(BBa_K1907000)as an energy acceptor
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 2306
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 1177
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 2174
Illegal BsaI.rc site found at 2959
Contents
Usage and Biology
To create an biosensor capable of detecting the anti-inflammatory drug ibuprofen, the FRET-based sensor system (BBa_K4447004) that we propose by changing the gene(BBa_K4447001), for the gene(BBa_K5439005). By changing the genes, our composite part can detect ibuprofen from water bodies. Ibuprofen is an anti-inflammatory treatment drug widely used in the world that can be bought without any necessary prescription. This makes ibuprofen a drug that everyone can consume easily, bringing problems because its disposal makes it an emerging contaminant in water bodies (Jan-Roblero, J., & Cruz-Maya, J. A., 2023). FRET (fluorescence resonance energy transfer) is a biosensor technique that detects biomolecules without modifying them. It relies on the proximity of fluorophore molecules to trigger fluorescence. This non-radiative process allows for sensitive and specific detection of environmental changes and biomolecule interactions. FRET biosensors are safe and versatile, able to detect protein-protein interactions, pH changes, enzyme activity, and more. They provide a reliable means of monitoring various biomolecular activities without the need for genetic modifications, making them valuable tools in research and diagnostics (Kumar-Verma, A., et al., 2023).
Characterization
Gene Aplification, Gibson Assembly and Transformation
Restriction Enzyme Digestion and Ligation
Finally, as a confirmation step, we performed minipreps on colonies from all 3 constructs and digested the plasmid using NcoI and XhoI enzymes, in order to ensure the transformed colonies contained the interest plasmid with the full construct (Figure X).
Protein Expression
Validation of our assembled FRET systems ECFP_IpfF_mVENUs
References
[1]. Jan-Roblero, J., & Cruz-Maya, J. A. (2023). Ibuprofen: Toxicology and Biodegradation of an Emerging Contaminant. Molecules (Basel, Switzerland), 28(5), 2097. https://doi.org/10.3390/molecules28052097
[2]. Kumar-Verma, A., Noumani, A., Yadav, A. K., & Solanki , P. R. (2023). FRET Based Biosensor: Principle Applications Recent Advances and Challenges. MDPI, 13(8), 1375–1375. https://doi.org/10.3390/diagnostics13081375