Difference between revisions of "Part:BBa K5241007"
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<partinfo>BBa_K5241007 short</partinfo> | <partinfo>BBa_K5241007 short</partinfo> | ||
− | Based on Pseudomonas_koreensis_D26 [gene=hppD][protein=4-hydroxyphenylpyruvate dioxygenase], a gene with a PelB signal peptide and 6His tag is synthesized, aiming for the tyrosinase to be localized to the bacterial periplasmic space. | + | <span style="font-weight: bold;">Short Description:</span>Based on Pseudomonas_koreensis_D26 [gene=hppD][protein=4-hydroxyphenylpyruvate dioxygenase], a gene with a PelB signal peptide and 6His tag is synthesized, aiming for the tyrosinase to be localized to the bacterial periplasmic space. |
+ | |||
+ | <span style="font-size: 150%; font-weight: bold;">Gene Circuit Diagram:</span> | ||
+ | |||
+ | <html> | ||
+ | <figure style="text-align:center;"><img style="width: 65%; padding:28px;"src="https://static.igem.wiki/teams/5241/wiki/parts-static/7/bba-k5241007-img01.png"> | ||
+ | <figcaption>T7 promoter RBS PeLB Pkhppd 6xHis T7 terminator</figcaption> | ||
+ | </figure> | ||
+ | </html> | ||
+ | |||
+ | <span style="font-size: 150%; font-weight: bold;">Description:</span> | ||
+ | |||
+ | 1. On the laminar flow hood, open the glycerol tube and streak on an LB plate with ampicillin. Make markings. | ||
+ | |||
+ | 2. On the laminar flow hood, open the plasmid tube and add sterile water according to the label. | ||
+ | |||
+ | 3. Transform the plasmid into E. coli BL21(DE3) or BL21(DE3)pLysS. Take 100 microliters to spread on an LB plate with ampicillin, and inoculate the rest into LB liquid medium with ampicillin. | ||
+ | |||
+ | 4. E. coli BL21(DE3) or BL21(DE3)pLysS (containing Pahdd-6xH in pET-21b(+)) is grown in LB medium with ampicillin at 37°C with overnight shaking. Then, inoculate 1/50 of the culture into 200 mL of the same medium and grow at 30°C with a shaking speed of 180 rpm. When the OD600 reaches 0.6, add 100 µg/mL IPTG, and further incubate the bacterial culture under the same conditions to observe melanin production. | ||
+ | |||
+ | <span style="font-size: 150%; font-weight: bold;">Result:</span> | ||
+ | |||
+ | <html> | ||
+ | <figure style="text-align:center;"><img style="width: 65%; padding:28px;"src="https://static.igem.wiki/teams/5241/wiki/parts-static/7/bba-k5241007-img02.png"></figure> | ||
+ | </html> | ||
+ | |||
+ | When attempting to induce the expression of PeLB-PkhppD-6XH for melanin production in Escherichia coli BL21 (DE3) / BL21 (DE3) pLys using L-arabinose, the expression outcome was not as effective as that of the hppD gene , with only a small amount of melanin being expressed. | ||
+ | |||
+ | <span style="font-size: 150%; font-weight: bold;">Reference documentation</span> | ||
+ | |||
+ | [1] Melati, R., Indriyani, A., Gaffar, S., Sriwidodo, & Maksum, I. P. (2019). Comparison of extracellular secretion of recombinant human epidermal growth factor using TorA and PelB signal peptides in Escherichia coli BL21 (DE3). Asian Journal of Pharmaceutical and Clinical Research, 12(11), 35316. https://doi.org/10.22159/ajpcr.2019.v12i11.35316 | ||
+ | |||
+ | |||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here |
Latest revision as of 09:35, 30 September 2024
PelB-PkhppD-6xH-20b(+)
Short Description:Based on Pseudomonas_koreensis_D26 [gene=hppD][protein=4-hydroxyphenylpyruvate dioxygenase], a gene with a PelB signal peptide and 6His tag is synthesized, aiming for the tyrosinase to be localized to the bacterial periplasmic space.
Gene Circuit Diagram:
Description:
1. On the laminar flow hood, open the glycerol tube and streak on an LB plate with ampicillin. Make markings.
2. On the laminar flow hood, open the plasmid tube and add sterile water according to the label.
3. Transform the plasmid into E. coli BL21(DE3) or BL21(DE3)pLysS. Take 100 microliters to spread on an LB plate with ampicillin, and inoculate the rest into LB liquid medium with ampicillin.
4. E. coli BL21(DE3) or BL21(DE3)pLysS (containing Pahdd-6xH in pET-21b(+)) is grown in LB medium with ampicillin at 37°C with overnight shaking. Then, inoculate 1/50 of the culture into 200 mL of the same medium and grow at 30°C with a shaking speed of 180 rpm. When the OD600 reaches 0.6, add 100 µg/mL IPTG, and further incubate the bacterial culture under the same conditions to observe melanin production.
Result:
When attempting to induce the expression of PeLB-PkhppD-6XH for melanin production in Escherichia coli BL21 (DE3) / BL21 (DE3) pLys using L-arabinose, the expression outcome was not as effective as that of the hppD gene , with only a small amount of melanin being expressed.
Reference documentation
[1] Melati, R., Indriyani, A., Gaffar, S., Sriwidodo, & Maksum, I. P. (2019). Comparison of extracellular secretion of recombinant human epidermal growth factor using TorA and PelB signal peptides in Escherichia coli BL21 (DE3). Asian Journal of Pharmaceutical and Clinical Research, 12(11), 35316. https://doi.org/10.22159/ajpcr.2019.v12i11.35316
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 43
Illegal EcoRI site found at 52
Illegal EcoRI site found at 967
Illegal PstI site found at 925 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 43
Illegal EcoRI site found at 52
Illegal EcoRI site found at 967
Illegal PstI site found at 925 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 43
Illegal EcoRI site found at 52
Illegal EcoRI site found at 967
Illegal XhoI site found at 1075 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 43
Illegal EcoRI site found at 52
Illegal EcoRI site found at 967
Illegal PstI site found at 925 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 43
Illegal EcoRI site found at 52
Illegal EcoRI site found at 967
Illegal PstI site found at 925
Illegal NgoMIV site found at 342
Illegal NgoMIV site found at 1140
Illegal AgeI site found at 319 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 316