Difference between revisions of "Part:BBa K176136"

 
 
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<partinfo>BBa_K176136 short</partinfo>
 
<partinfo>BBa_K176136 short</partinfo>
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K176136 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K176136 SequenceAndFeatures</partinfo>
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=='''MEARSUREMENT'''==
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{{USTC//measure-126}}
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===Model===
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To see the details of the model, click [http://2009.igem.org/Team:USTC/Modeling/Model-3 here] please.
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{{USTC//K176136}}
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{{USTC//K176126-2}}
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{{USTC//protocol-AHL}}
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Latest revision as of 10:43, 21 October 2009

aTc&AHL->GFP: pCon 0.70->tetR-LVA+pCon 0.36->luxR+pLux/Tet->GFP

Input aTc activates GFP. Input AHL activates GFP.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal NheI site found at 898
    Illegal NheI site found at 921
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1876
    Illegal BsaI.rc site found at 2620

MEARSUREMENT

We test the response of the hybrid promoter( K176000) to both tetR and AHL. Here LuxR is ligated after J23107. 

INPUT : constitutive promoters +tetR , AHL
DEVICE: K176136( J23101 + K176126);
K176140( J23115 + K176126);
K176144( J23103 + K176126);
OUTPUT: GFP

Model

To see the details of the model, click [http://2009.igem.org/Team:USTC/Modeling/Model-3 here] please.

data

K176136

AHL(M) T(h) OD600 FLU(arbitrary) FLU/OD600(arbitrary) ST.FLU/OD600(ustc_st1)
0 0.5 0.191333333 0.230333333 1.203832753 4.811481825
1.00E-10 0.5 0.191 0.313666667 1.642233857 6.56368448
1.00E-09 0.5 0.193666667 0.412 2.127366609 8.502664306
1.00E-08 0.5 0.189333333 0.464333333 2.452464789 9.802017541
1.00E-07 0.5 0.188 0.483 2.569148936 10.26838104
1.00E-05 0.5 0.161666667 0.575 3.556701031 14.21543178
0 1.5 0.249 0.286666667 1.151271754 4.60140589
1.00E-10 1.5 0.249333333 0.411666667 1.651069519 6.598998876
1.00E-09 1.5 0.250666667 1.536 6.127659574 24.49104546
1.00E-08 1.5 0.248 2.437666667 9.829301075 39.28577568
1.00E-07 1.5 0.244 2.441666667 10.0068306 39.99532614
1.00E-05 1.5 0.202666667 2.552333333 12.59375 50.33473221
0 3 0.356666667 1.029333333 2.885981308 11.53469748
1.00E-10 3 0.361666667 1.441333333 3.985253456 15.92827121
1.00E-09 3 0.357333333 7.754333333 21.7005597 86.73285252
1.00E-08 3 0.356666667 11.61666667 32.57009346 130.1762328
1.00E-07 3 0.354 11.41833333 32.25517891 128.9175816
1.00E-05 3 0.297333333 11.67633333 39.27017937 156.9551534 
For the details of the definition of ST.FLU and the unit ustc_st1, please click  here.

plot

Figure 1- this steregram shows the response of K176136 to both time and AHL. From this gram, we can see that the GFP expression reaches its top at some definite AHL(1.E-08) concentration at any time in the range of allowable error.
Figure 4- the steregram shows the response of different device( K176136; K176140; K176144 ) to both tetR and AHL. In this gram, the score( click here to see the details) represents the relative strength of different promoter before tetR-LVA, that is , to represent the INPUT of tetR.

protocol

AHLHybrid promoter:BBa_K176026, BBa_K176126, BBa_K176128, BBa_K176130

1. Streak a plate of the strain which contain one of the parts listed in pSB1A3 .

2. Inoculate two 3ml cultures of supplemented M9 Medium and antibiotic(Ampicillin 0.1mg/ml) with single colony from the plate.

3. Cultures were grown in test tubes（BIO BASIC INC.12ml Polypropylene Round-bottom Culture Tubes With Graduations And Dual Cap Cat.No:TD444） for 16hrs at 37℃ with shaking at 200rpm.

4. Cultures were diluted 1:1000 to tubes of 3ml fresh medium and grown for 4.5hrs.

5. Stock concentration of the cognate AHL, 3-oxohexanoyl-homoserine is diluted and added to different tubes to yield different final concentrations (1E-5,1E-7,1E-8,1E-9,1E-10M).To ensure the same response time , the AHL should be added with a time interval of 2mins between tubes, so do the measurements procedure.

6. Measure the fluorescence(SHIMDZU SPECTROFLUOROPHOTOMETER RF-5301PC, 250ul quartz cell path length 10mm,501 nm excitation,514 nm emission,1.5nm slit width) and absorbance ((HITACHI UV-VIS spectrophotometer U-2810 ,200ul quartz cell path length 10mm,600nm,1.5 nm slit width) for the first time 30 minutes after adding AHL. Repeat measurement every 30 mins in the next 4hrs.