Difference between revisions of "Part:BBa K176071"

 
 
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<partinfo>BBa_K176071 short</partinfo>
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K176071 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K176071 SequenceAndFeatures</partinfo>
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{{USTC//measure-30}}
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===Model===
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To see the details of the model, click [http://2009.igem.org/Team:USTC/Modeling/Model-3 here] please.
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{{USTC//K176071}}
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{{USTC//protocol-AHL+aTc}}
  
  

Latest revision as of 10:40, 21 October 2009

aTc&AHL->GFP: pCon 0.36->tetR-LVA+pCon 0.70->luxR+pLux/Tet->GFP

Input aTc activates GFP. Input AHL activates GFP.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal NheI site found at 898
    Illegal NheI site found at 921
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1876
    Illegal BsaI.rc site found at 2620

MEASUREMENT

We tested the response of the hybrid promoter (K176000) to both AHL and aTc. 

INPUT : AHL, aTc
DEVICE:
            K176071( J23107 + K176030);
            K176075( J23115 + K176030);
OUTPUT: GFP

Model

To see the details of the model, click [http://2009.igem.org/Team:USTC/Modeling/Model-3 here] please.

data

K176071

T(min) NUMBER AHL(M) ATC(M) FLU(arbitrary) OD600 FLU/OD600 ST.FLU/OD600(ustc_st1)
0 1 0.00E+00 0 0.011 0.467 42.45454545 169.7027839
0 2 1.00E-06 0 0.020666667 1.170666667 56.64516129 226.426675
0 3 1.00E-06 0.001 0.016 0.304 19 75.94835512
0 4 1.00E-06 0.01 0.016 0.236666667 14.79166667 59.12646067
0 5 1.00E-06 0.1 0.019666667 0.461333333 23.45762712 93.76674709
0 6 1.00E-06 1 0.022 0.267333333 12.15151515 48.57303095
0 7 1.00E-04 0 0.02 0.193333333 9.666666667 38.6403912
0 8 1.00E-04 0.001 0.017 0.147666667 8.68627451 34.72148743
0 9 1.00E-04 0.01 0.02 0.077333333 3.866666667 15.45615648
0 10 1.00E-04 0.1 0.021 0.133333333 6.349206349 25.37956729
0 11 1.00E-04 1 0.021 0.103666667 4.936507937 19.73261357
60 1 0.00E+00 0 0.028666667 0.116 4.046511628 16.17504748
60 2 1.00E-06 0 0.031 0.078 2.516129032 10.05767691
60 3 1.00E-06 0.001 0.033 0.251666667 7.626262626 30.48432117
60 4 1.00E-06 0.01 0.036 3.021 83.91666667 335.4385684
60 5 1.00E-06 0.1 0.037 4.382 118.4324324 473.4078124
60 6 1.00E-06 1 0.033 0.552666667 16.74747475 66.94437681
60 7 1.00E-04 0 0.038 0.210333333 5.535087719 22.12530567
60 8 1.00E-04 0.001 0.037 0.625333333 16.9009009 67.55766439
60 9 1.00E-04 0.01 0.037666667 4.063 107.8672566 431.175827
60 10 1.00E-04 0.1 0.036 6.538333333 181.6203704 725.9878098
60 11 1.00E-04 1 0.027 0.766 28.37037037 113.4043665
180 1 0.00E+00 0 0.079333333 0.127666667 1.609243697 6.432600621
180 2 1.00E-06 0 0.082 0.173333333 2.113821138 8.449538866
180 3 1.00E-06 0.001 0.091666667 1.005333333 10.96727273 43.8392802
180 4 1.00E-06 0.01 0.077 25.80233333 335.0952381 1339.470113
180 5 1.00E-06 0.1 0.081 28.226 348.4691358 1392.929351
180 6 1.00E-06 1 0.027333333 3.880333333 141.9634146 567.4677804
180 7 1.00E-04 0 0.093 1.224 13.16129032 52.60938691
180 8 1.00E-04 0.001 0.092 8.581333333 93.27536232 372.8479127
180 9 1.00E-04 0.01 0.081 37.95933333 468.6337449 1873.261162
180 10 1.00E-04 0.1 0.07 39.35 562.1428571 2247.043439
180 11 1.00E-04 1 0.020333333 3.697 181.8196721 726.7844751
420 1 0.00E+00 0 0.537666667 0.515 0.957842529 3.828766557
420 2 1.00E-06 0 0.6 0.521 0.868333333 3.470973072
420 3 1.00E-06 0.001 0.613 1.356333333 2.212615552 8.844447983
420 4 1.00E-06 0.01 0.53 58.196 109.8037736 438.916631
420 5 1.00E-06 0.1 0.479333333 219.83 458.6161335 1833.217946
420 6 1.00E-06 1 0.058333333 12.569 215.4685714 861.2886095
420 7 1.00E-04 0 0.604666667 5.103333333 8.439911797 33.73670623
420 8 1.00E-04 0.001 0.584 20.67833333 35.40810502 141.5361755
420 9 1.00E-04 0.01 0.440333333 335.6466667 762.2558668 3046.95154
420 10 1.00E-04 0.1 0.331666667 295.83 891.9497487 3565.37454
420 11 1.00E-04 1 0.043 18.108 421.1162791 1683.320458 
For the details of the definition of ST.FLU and the unit ustc_st1, please click here.

plot

Figure 1- the hybrid promoter's ( K176000) response to aTc and AHL at definit time( here we choose t=7h) by examing K176071
Figure 2- the hybrid promoter's (K176000) time response at different conditions by examing K176071. The 11 different conditions , whose details are shown in the chart below, differs from each other with different AHL concentration and aTc concentration.
conditions 1 2 3 4 5 6 7 8 9 10 11
AHL/M 0.00E+00 1.00E-06 1.00E-06 1.00E-06 1.00E-06 1.00E-06 1.00E-04 1.00E-04 1.00E-04 1.00E-04 1.00E-04
Atc/(ng/ml) 0 0 2 20 200 2000 0 2 20 200 2000

protocols

aTc,AHLHybrid promoter: BBa_K176070, BBa_K176071, BBa_K176075, BBa_K176078:

1. Streak a plate of the strain which contain one of the parts listed in pSB1A3 .

2. Inoculate two 3ml cultures of supplemented M9 Medium and antibiotic(Ampicillin 0.1mg/ml) with single colony from the plate.

3. Cultures were grown in test tubes（BIO BASIC INC.12ml Polypropylene Round-bottom Culture Tubes With Graduations And Dual Cap Cat.No:TD444） for 16hrs at 37℃ with shaking at 200rpm..

4. Cultures were diluted 1:1000 to 11 tubes 3ml fresh medium and grown for 4.5hrs.

5. Stock concentration of the cognate AHL, 3-oxohexanoyl-homoserine and aTc (anhydrotetracycline) are diluted and added to different tube to get different final concentration listed in the table below:

Tube No. 1 2 3 4 5 6 7 8 9 10 11
c(AHL)/M 0 1.00E-06 1.00E-06 1.00E-06 1.00E-06 1.00E-06 1.00E-04 1.00E-04 1.00E-04 1.00E-04 1.00E-04
C(Atc)/ng/ml 0 0 2 20 200 2000 0 2 20 200 2000

To ensure the same response time , the AHL and aTc should be added with a time interval of 2mins between tubes, so do the measurements procedure.

7. Measure the fluorescence(SHIMDZU SPECTROFLUOROPHOTOMETER RF-5301PC, 250ul quartz cell path length 10mm,501 nm excitation,514 nm emission,1.5nm slit width) and absorbance ((HITACHI UV-VIS spectrophotometer U-2810 ,200ul quartz cell path length 10mm,600nm,1.5 nm slit width) for the first time 30 minutes after adding AHL and aTc. Repeat measurement several hours a time until OD600 reach to 0.8,it will take about 7hours in average.