Difference between revisions of "Part:BBa K5082009"
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Figure 1. pHAGE plasmid map. | Figure 1. pHAGE plasmid map. | ||
− | Design | + | ===Design=== |
The above characteristics have made pHAGE an ideal plasmid for our experiment. In our experiment, we inserted a G3BP1 gene into the plasmid. Upon amplification, we transfected the plasmid into stomach cells at different concentrations to measure the sensitivity of the sensor we designed. The results were as expected, proving the effectiveness of this plasmid backbone. | The above characteristics have made pHAGE an ideal plasmid for our experiment. In our experiment, we inserted a G3BP1 gene into the plasmid. Upon amplification, we transfected the plasmid into stomach cells at different concentrations to measure the sensitivity of the sensor we designed. The results were as expected, proving the effectiveness of this plasmid backbone. |
Revision as of 10:44, 7 September 2024
Usage and Biology
Plasmids are double stranded circular DNA molecules, which carry non-essential genes, found in bacterial cells [1]. Plasmids are multifunction, easy to edit, and can be amplified quickly by bacterial cellular machinery [2]. These advantages have made plasmids a popular tool in genetic research.
pHAGE is a mammalian expression vector [3]. The pHAGE plasmid can be amplified by DH5α bacterial cells. Meanwhile, it carries an ampicillin resistance gene for selection. The plasmid map for pCMV-EGFP is shown in Figure 1.
Figure 1. pHAGE plasmid map.
Design
The above characteristics have made pHAGE an ideal plasmid for our experiment. In our experiment, we inserted a G3BP1 gene into the plasmid. Upon amplification, we transfected the plasmid into stomach cells at different concentrations to measure the sensitivity of the sensor we designed. The results were as expected, proving the effectiveness of this plasmid backbone.
Reference
[1] Carattoli, Alessandra. “Plasmids in Gram Negatives: Molecular Typing of Resistance Plasmids.” International Journal of Medical Microbiology, vol. 301, no. 8, Dec. 2011, pp. 654–658
[2] Patron, N.J. Synthetic Biology and Gene Cloning. Elsevier EBooks, Elsevier BV, 1 Jan. 2017, pp. 112–117
[3] “Addgene: PTS106 PHAGE2 CMVtetO2 MCS-3C-SUMOEu-22xGS-GFP.” Addgene.org, 2024, www.addgene.org/199359/. Accessed 15 Aug. 2024.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 2028
Illegal EcoRI site found at 2972
Illegal SpeI site found at 2212
Illegal SpeI site found at 3227
Illegal PstI site found at 3484 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 2028
Illegal EcoRI site found at 2972
Illegal SpeI site found at 2212
Illegal SpeI site found at 3227
Illegal PstI site found at 3484
Illegal NotI site found at 2879 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 2028
Illegal EcoRI site found at 2972
Illegal BglII site found at 473
Illegal BglII site found at 4743
Illegal BglII site found at 4809
Illegal BglII site found at 4850
Illegal BamHI site found at 2859
Illegal XhoI site found at 2871 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 2028
Illegal EcoRI site found at 2972
Illegal SpeI site found at 2212
Illegal SpeI site found at 3227
Illegal PstI site found at 3484 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 2028
Illegal EcoRI site found at 2972
Illegal SpeI site found at 2212
Illegal SpeI site found at 3227
Illegal PstI site found at 3484
Illegal NgoMIV site found at 1146
Illegal NgoMIV site found at 4627
Illegal AgeI site found at 3092 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 455
Illegal BsaI site found at 4832
Illegal BsaI site found at 6036
Illegal BsaI.rc site found at 3982
Illegal SapI.rc site found at 1107
Illegal SapI.rc site found at 7118