Difference between revisions of "Part:BBa K4724008"
 
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<partinfo>BBa_K4724008 short</partinfo>
 
<partinfo>BBa_K4724008 short</partinfo>
  
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IsPETase is a hydrolase produced by Ideonella sakaiensis that degrades PET. Phenylalanine is a hydrophobic amino acid that promotes the formation of a hydrophobic environment in the active pocket. Phenylalanine is a hydrophobic amino acid that can promote the formation of a hydrophobic environment in the active pocket. Phenylalanine also has a benzene ring, which can form a large pi-bond with PET. Therefore, Q119F can promote the binding of IsPETase to PET substrate.  
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IsPETase is a hydrolase produced by <i>Ideonella sakaiensis</i> that degrades PET. Phenylalanine is a hydrophobic amino acid that promotes the formation of a hydrophobic environment in the active pocket. Phenylalanine is a hydrophobic amino acid that can promote the formation of a hydrophobic environment in the active pocket. Phenylalanine also has a benzene ring, which can form a large pi-bond with PET. Therefore, Q119F can promote the binding of <i>Is</i>PETase to PET substrate.  
 
<h1>Constraction</h1>
 
<h1>Constraction</h1>
  
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https://static.igem.wiki/teams/4724/wiki/fig-1.png
 
https://static.igem.wiki/teams/4724/wiki/fig-1.png
  
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Fig.1 Plasmid PCR Nucleic Acid Gel Electrophoresis
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Fig.1 Nucleic acid gel electrophoresis for PCR of plasmid
  
 
<h1>Characterization</h1>
 
<h1>Characterization</h1>
  
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After protein purification, enzymatic reactions were performed to measure enzyme activity. The substrate used was PET powder, which was broken down into TPA and MHET in the presence of an IsPETase mutant, and the volume of purified enzyme solution required for a 500 μL reaction system was determined based on protein concentration. The reaction was carried out at 30°C, 37°C and 45°C for 48 h. After the reaction, the reaction solution was analyzed by high performance liquid chromatography (HPLC), and the liquid phase result at 6 min corresponded to TPA and the liquid phase result at 8 min corresponded to MHET. The peak areas of the products outputted from the liquid chromatography were converted into the product concentrations by standard curves, as shown in Fig. 2  
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After protein purification, enzymatic reactions were performed to measure enzyme activity. The substrate used was PET powder, which was broken down into TPA and MHET in the presence of an <i>Is</i>PETase mutant, and the volume of purified enzyme solution required for a 500 μL reaction system was determined based on protein concentration. The reaction was carried out at 30°C, 37°C and 45°C for 48 h. After the reaction, the reaction solution was analyzed by high performance liquid chromatography (HPLC), and the liquid phase result at 6 min corresponded to TPA and the liquid phase result at 8 min corresponded to MHET. The peak areas of the products outputted from the liquid chromatography were converted into the product concentrations by standard curves, as shown in Fig. 2  
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Fig. 2 WT and T116R at 500 nM at different temperatures. Fig.2 Fig.2 Concentrations of TPA and MHET of 500nM WT and T116R reacted with PET powder at different temperatures for 48h. (A) and (B) are the product concentrations obtained at a reaction temperature of 30°C; (C) and (D) are the product concentrations obtained at a reaction temperature of 37°C; (E) and (F) are the product concentrations obtained at a reaction temperature of 45°C. The product peak areas of 500 nM WT and T116R were converted into product concentrations as shown in Fig.2.
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<img src="https://static.igem.wiki/teams/4724/wiki/ab.png " style="width:60vw;">
 
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<h1>Conclusion</h1>
 
<h1>Conclusion</h1>
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At 30 °C, the concentration of <i>Is</i>PETase<sup>Q119F</sup> product is about 2 times that of WT.
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At 37 °C, the concentration of <i>Is</i>PETase<sup>Q119F</sup> product was similar to that of WT.
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At 45 °C, the concentration of <i>Is</i>PETase<sup>Q119F</sup> product is about 4 times that of WT.
  
  

Latest revision as of 14:47, 12 October 2023


IsPETaseQ119F-6xHis Tag

IsPETase is a hydrolase produced by Ideonella sakaiensis that degrades PET. Phenylalanine is a hydrophobic amino acid that promotes the formation of a hydrophobic environment in the active pocket. Phenylalanine is a hydrophobic amino acid that can promote the formation of a hydrophobic environment in the active pocket. Phenylalanine also has a benzene ring, which can form a large pi-bond with PET. Therefore, Q119F can promote the binding of IsPETase to PET substrate.

Constraction

The plasmid was PCR with pET-22b(+) as the vector, and the PCR bands were verified by nucleic acid gel electrophoresis after mutation. The plasmid with the correct bands was transformed into E.coli BL21(DE3) sensory state. fig-1.png

Fig.1 Nucleic acid gel electrophoresis for PCR of plasmid

Characterization

After protein purification, enzymatic reactions were performed to measure enzyme activity. The substrate used was PET powder, which was broken down into TPA and MHET in the presence of an IsPETase mutant, and the volume of purified enzyme solution required for a 500 μL reaction system was determined based on protein concentration. The reaction was carried out at 30°C, 37°C and 45°C for 48 h. After the reaction, the reaction solution was analyzed by high performance liquid chromatography (HPLC), and the liquid phase result at 6 min corresponded to TPA and the liquid phase result at 8 min corresponded to MHET. The peak areas of the products outputted from the liquid chromatography were converted into the product concentrations by standard curves, as shown in Fig. 2

Fig.2 Concentrations of the products TPA and MHET of 500 nM WT and Q119F reacted with PET powder at different temperatures for 48h. (A) and (B) are the concentrations of the products obtained at a reaction temperature of 30°C; (C) and (D) are the concentrations of the products obtained at a reaction temperature of 37°C; (E) and (F) are the concentrations of the products obtained at a reaction temperature of 45°C. The concentrations of TPA and MHET were obtained at different temperatures.

Conclusion

At 30 °C, the concentration of IsPETaseQ119F product is about 2 times that of WT.

At 37 °C, the concentration of IsPETaseQ119F product was similar to that of WT.

At 45 °C, the concentration of IsPETaseQ119F product is about 4 times that of WT.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 56
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 56
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 790
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 56
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 56
    Illegal AgeI site found at 546
  • 1000
    COMPATIBLE WITH RFC[1000]