Difference between revisions of "Part:BBa K108005"
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<partinfo>BBa_K108005 short</partinfo> | <partinfo>BBa_K108005 short</partinfo> | ||
| − | flagellar protein of basal-body outer-membrane L ring | + | flagellar protein of basal-body outer-membrane L ring of E.coli |
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| + | ==Contribution From CAU_China 2023== | ||
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| + | '''Group''': CAU_China, 2023 https://2023.igem.wiki/cau-china/ | ||
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| + | '''Author''': Huang yaohan, Zhang Xiyuan, Sun Qianhui | ||
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| + | '''Summary''':Verified that this basic Part can work in Escherichia coli and we added some experimental conditions and result images . | ||
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| + | ===Characterization=== | ||
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| + | <p>The FlgH protomer in the L ring has an oblique arrow-like shape and consists of a long N-terminal loop (LN), six central β strands (β1–β6), and three α helices (α1–α3)</i><sup>[1]</sup>.</p> | ||
| + | We are trying to develop FlgH as a new carrier protein and use its characteristic of being relatively fixed on the cell wall to achieve our special requirements for the spatial location of the display protein. | ||
| + | In order to exert the display function, we chose to add the passenger protein to a special middle region of FlgH, and the two were fused through a connecting peptide(BBa_K4614106). | ||
| + | The α1 region of FlgH is exposed on the OM and is a highly variable region</i><sup>[1]</sup>, which is the most suitable region for the insertion of the passenger protein. After considering reducing or not interfering with the interaction between monomeric FlgH</i><sup>[1]</sup>and the interaction between FlgH and LPS</i><sup>[2]</sup>, we chose to insert the passenger protein between T108 and V109. | ||
| + | We verify cross-linking in two ways: by measuring optical density 600 and microscopy. Limited by our time and energy, we did not specifically characterize whether FlgH successfully displays passenger proteins. However, based on the results of our cross-linking characterization experiments, we believe that FlgH has successfully displayed the passenger protein on the surface of the cell (Fig1). For details, please refer to <a href="https://parts.igem.org/Part:BBa_K4614102">BBa_K4614102</a>. Also, due to the cross-linking between bacteria, the buoyancy increases, and after standing for a period of time, fewer bacteria settle down, and the remaining rate of bacteria is greater (Fig2). For details, please refer to <a href="https://parts.igem.org/Part:BBa_K4614100">BBa_K4614100</a> | ||
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| + | <p><img src="https://static.igem.wiki/teams/4614/wiki/parts-jl/od.png" width="500" class="centered-image"></p> | ||
| + | <p class="figurelegend">Fig1. Quantitative verification of adherence of bacteria.</p> | ||
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| + | <p><img src="https://static.igem.wiki/teams/4614/wiki/parts-jl/jl-2.png" width="500" class="centered-image"></p> | ||
| + | <p class="figurelegend">Fig2. Observation of bacterial adhesion by laser microscopy Observation of bacterial adhesion by laser microscopy were observed under a laser microscope (1000×).</p> | ||
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| + | References of CAU_China.</p> | ||
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| + | </p>[1] Hatlem, Daniel et al. “Catching a SPY: Using the SpyCatcher-SpyTag and Related Systems for Labeling and Localizing Bacterial Proteins.” International journal of molecular sciences vol. 20,9 (2019): 1-10. doi:10.3390/ijms20092129</p> | ||
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| + | </p>[2] Kozlowski, Mark T et al. “Genetically Programmable Microbial Assembly.” ACS synthetic biology vol. 10,6 (2021): 1351-1359. doi:10.1021/acssynbio.0c00616</p> | ||
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Latest revision as of 12:23, 12 October 2023
FlgH
flagellar protein of basal-body outer-membrane L ring of E.coli
Contribution From CAU_China 2023
Group: CAU_China, 2023 https://2023.igem.wiki/cau-china/
Author: Huang yaohan, Zhang Xiyuan, Sun Qianhui
Summary:Verified that this basic Part can work in Escherichia coli and we added some experimental conditions and result images .
Characterization
The FlgH protomer in the L ring has an oblique arrow-like shape and consists of a long N-terminal loop (LN), six central β strands (β1–β6), and three α helices (α1–α3)[1].
We are trying to develop FlgH as a new carrier protein and use its characteristic of being relatively fixed on the cell wall to achieve our special requirements for the spatial location of the display protein. In order to exert the display function, we chose to add the passenger protein to a special middle region of FlgH, and the two were fused through a connecting peptide(BBa_K4614106). The α1 region of FlgH is exposed on the OM and is a highly variable region[1], which is the most suitable region for the insertion of the passenger protein. After considering reducing or not interfering with the interaction between monomeric FlgH[1]and the interaction between FlgH and LPS[2], we chose to insert the passenger protein between T108 and V109. We verify cross-linking in two ways: by measuring optical density 600 and microscopy. Limited by our time and energy, we did not specifically characterize whether FlgH successfully displays passenger proteins. However, based on the results of our cross-linking characterization experiments, we believe that FlgH has successfully displayed the passenger protein on the surface of the cell (Fig1). For details, please refer to BBa_K4614102. Also, due to the cross-linking between bacteria, the buoyancy increases, and after standing for a period of time, fewer bacteria settle down, and the remaining rate of bacteria is greater (Fig2). For details, please refer to BBa_K4614100
Fig1. Quantitative verification of adherence of bacteria.
Fig2. Observation of bacterial adhesion by laser microscopy Observation of bacterial adhesion by laser microscopy were observed under a laser microscope (1000×).
References of CAU_China. [1] Hatlem, Daniel et al. “Catching a SPY: Using the SpyCatcher-SpyTag and Related Systems for Labeling and Localizing Bacterial Proteins.” International journal of molecular sciences vol. 20,9 (2019): 1-10. doi:10.3390/ijms20092129 [2] Kozlowski, Mark T et al. “Genetically Programmable Microbial Assembly.” ACS synthetic biology vol. 10,6 (2021): 1351-1359. doi:10.1021/acssynbio.0c00616 Sequence and Features