Difference between revisions of "Part:BBa K4880006"
 
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<partinfo>BBa_K4880006 short</partinfo>
 
<partinfo>BBa_K4880006 short</partinfo>
  
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This composite part encodes for Theo-induced AgBS and is composed of the basic part theophylline inducible promoter and bisabolene synthase.  
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This composite part encodes for AgBS and is composed of the basic parts theophylline inducible promoter and bisabolene synthase.  
  
 
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<partinfo>BBa_K4880006 parameters</partinfo>
 
<partinfo>BBa_K4880006 parameters</partinfo>
 
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===Assembly===
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===Plasmid construction===
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Through homologous recombination, we integrated the bisabolene synthase gene into the broad host range replicative vector pPMQAK1 along with the theophylline inducible promoter. The following figure shows the recombinant plasmid.
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<center><html><img src ="https://static.igem.wiki/teams/4880/wiki/parts/agbs-plasmid.png" width = "50%"><br></html></center>
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<center>Figure 1: pPMQAK1-Ptrc-theo-AgBS plasmid diagram</center>
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===Parts===
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===Theophylline inducible promoter===
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We decided to use an induction system composed of Ptrc promoter and theophylline dependent riboswitch theo E* to control the expression of the α-pinene synthase. The Ptrc promoter is a hybrid of lac and trp, making it stronger than the lac promoter. Transcription is regulated by IPTG and translation initiates only when there is theophylline present. This double regulation strictly regulates gene expression.
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===Bisabolene synthase===
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Bisabolene synthase converts farnesyl pyrophosphate to E-α-bisabolene and is isolated from Abides grandis.
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===Results===
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After transforming pPMQAK1-Ptrc-theo-AgBS into E.coli DH5α, we performed colony PCR on the monocultures and selected the successfully transformed ones for amplification and extraction to later transform it into Synechocystis sp. PCC 6803. The figure below shows the colony PCR results. 
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<center><html><img src ="https://static.igem.wiki/teams/4880/wiki/parts/agbs-ecoli-gel.jpg" width = "40%"><br></html></center>
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<center>Figure 2: AgBS colony PCR gel electrophoresis results (E. coli DH5α)</center>
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To further confirm the constructed plasmids are correct, we sent them to be sequenced. Below are the sequencing results. 
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<center><html><img src ="https://static.igem.wiki/teams/4880/wiki/parts/agbs-sequencing.png" width = "75%"><br></html></center>
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<center>Figure 3: sequencing results of pPMQAK1-Ptrc-theo-AgBS (E. coli DH5α)</center> 
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After transforming pPMQAK1-Ptrc-theo-AgB into Synechocystis sp. PCC 6803, we performed colony PCR. Below are the results.
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<center><html><img src ="https://static.igem.wiki/teams/4880/wiki/parts/agbs-6803-gel.png" width = "40%"><br></html></center>
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<center>Figure 4: AgBS colony PCR gel electrophoresis results (Synechocystis sp. PCC 6803)</center>
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To test whether bisabolene is produced, we plan on performing gas chromatography with the help of our advisors.
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===References===
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Blanc-Garin V, Chenebault C, Diaz-Santos E, Vincent M, Sassi JF, Cassier-Chauvat C, Chauvat F. Exploring the potential of the model cyanobacterium Synechocystis PCC 6803 for the photosynthetic production of various high-value terpenes. Biotechnol Biofuels Bioprod. 2022 Oct 14;15(1):110.

Latest revision as of 09:01, 12 October 2023


Ptrc-theo-AgBS

This composite part encodes for AgBS and is composed of the basic parts theophylline inducible promoter and bisabolene synthase.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1842
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 1842
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 1437
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1842
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1842
    Illegal AgeI site found at 55
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 225
    Illegal BsaI.rc site found at 666
    Illegal BsaI.rc site found at 1449


Assembly

Plasmid construction

Through homologous recombination, we integrated the bisabolene synthase gene into the broad host range replicative vector pPMQAK1 along with the theophylline inducible promoter. The following figure shows the recombinant plasmid.


Figure 1: pPMQAK1-Ptrc-theo-AgBS plasmid diagram

Parts

Theophylline inducible promoter

We decided to use an induction system composed of Ptrc promoter and theophylline dependent riboswitch theo E* to control the expression of the α-pinene synthase. The Ptrc promoter is a hybrid of lac and trp, making it stronger than the lac promoter. Transcription is regulated by IPTG and translation initiates only when there is theophylline present. This double regulation strictly regulates gene expression.

Bisabolene synthase

Bisabolene synthase converts farnesyl pyrophosphate to E-α-bisabolene and is isolated from Abides grandis.

Results

After transforming pPMQAK1-Ptrc-theo-AgBS into E.coli DH5α, we performed colony PCR on the monocultures and selected the successfully transformed ones for amplification and extraction to later transform it into Synechocystis sp. PCC 6803. The figure below shows the colony PCR results.


Figure 2: AgBS colony PCR gel electrophoresis results (E. coli DH5α)

To further confirm the constructed plasmids are correct, we sent them to be sequenced. Below are the sequencing results.


Figure 3: sequencing results of pPMQAK1-Ptrc-theo-AgBS (E. coli DH5α)

After transforming pPMQAK1-Ptrc-theo-AgB into Synechocystis sp. PCC 6803, we performed colony PCR. Below are the results.


Figure 4: AgBS colony PCR gel electrophoresis results (Synechocystis sp. PCC 6803)

To test whether bisabolene is produced, we plan on performing gas chromatography with the help of our advisors.

References

Blanc-Garin V, Chenebault C, Diaz-Santos E, Vincent M, Sassi JF, Cassier-Chauvat C, Chauvat F. Exploring the potential of the model cyanobacterium Synechocystis PCC 6803 for the photosynthetic production of various high-value terpenes. Biotechnol Biofuels Bioprod. 2022 Oct 14;15(1):110.