Difference between revisions of "Part:BBa K203113"
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<partinfo>BBa_K203113 short</partinfo> | <partinfo>BBa_K203113 short</partinfo> | ||
| − | Constitutive promoter at approx. 0.5 REU, created by cloning the Jet Proximal promoter in front of the CMV core promoter. Demonstrates that promoter strength can be modified by swapping Core promoters. Contains a HinDIII site between core and proximal promoter for that purpose. | + | Constitutive promoter at approx. 0.5 REU, created by cloning the Jet Proximal promoter in front of the CMV core promoter. Demonstrates that promoter strength can be modified by swapping Core promoters. Contains a HinDIII site between core and proximal promoter for that purpose. May be used for creating novel promoters containing the CMV core promoter. |
===Usage and Biology=== | ===Usage and Biology=== | ||
| − | Mammalian promoters can be subdivided into several "domains". The core promoter is the binding site of the basal transcription machinery, i.e. RNA polymerase and associated factors. Core promoters differ in composition, but are more or less similar for most genes | + | Mammalian promoters can be subdivided into several "domains". The core promoter is the binding site of the basal transcription machinery, i.e. RNA polymerase and associated factors. Core promoters differ in composition, but are more or less similar for most genes [1]. The main regulatory domain is the proximal promoter, which is where regulatory elements bind. It can be very large (4kb), meaning that some transcription factors regulate transcription despite being very far away from the RNA polymerase. If the core promoter prevents optimal binding of the basal transcription machinery, promoter strength varies without affecting regulation. |
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| + | [1] Heintzman ND, Ren B. The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome. Cellular and Molecular Life Science 64, 386-400 (2007). | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K203113 SequenceAndFeatures</partinfo> | <partinfo>BBa_K203113 SequenceAndFeatures</partinfo> | ||
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===Functional Parameters=== | ===Functional Parameters=== | ||
<partinfo>BBa_K203113 parameters</partinfo> | <partinfo>BBa_K203113 parameters</partinfo> | ||
| − | We characterized this promoter in [[Part:BBa_K203100]] as a first application for its newly developed units of promoter strength in mammalian cells, [http://2009.igem.org/Team:Heidelberg/Project_Measurement Relative Expression Units (REU)]. We found it to have a strength of 0,63 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#HeLa HeLa cells], 0,58 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#MCF-7 MCF-7 cells] and 0,56 REU | + | We characterized this promoter in [[Part:BBa_K203100]] as a first application for its newly developed units of promoter strength in mammalian cells, [http://2009.igem.org/Team:Heidelberg/Project_Measurement Relative Expression Units (REU)]. We found it to have a strength of 0,63 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#HeLa HeLa cells], 0,58 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#MCF-7 MCF-7 cells] and 0,56 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#U2-OS U2-OS cells] cells (Fig 1). |
[[Image:JeT_CMV_standard2.png|thumb|none|400px|Figure 1: Strength of the CMV core - JeT proximal promoter in different cell lines. Relative Expression Units (REU) was determined by Flow cytometry; 3 experiments on different days, three replicates for each measurement.]] | [[Image:JeT_CMV_standard2.png|thumb|none|400px|Figure 1: Strength of the CMV core - JeT proximal promoter in different cell lines. Relative Expression Units (REU) was determined by Flow cytometry; 3 experiments on different days, three replicates for each measurement.]] | ||
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Latest revision as of 14:55, 20 October 2009
JeT proximal-CMV core; constitutive promoter
Constitutive promoter at approx. 0.5 REU, created by cloning the Jet Proximal promoter in front of the CMV core promoter. Demonstrates that promoter strength can be modified by swapping Core promoters. Contains a HinDIII site between core and proximal promoter for that purpose. May be used for creating novel promoters containing the CMV core promoter.
Usage and Biology
Mammalian promoters can be subdivided into several "domains". The core promoter is the binding site of the basal transcription machinery, i.e. RNA polymerase and associated factors. Core promoters differ in composition, but are more or less similar for most genes [1]. The main regulatory domain is the proximal promoter, which is where regulatory elements bind. It can be very large (4kb), meaning that some transcription factors regulate transcription despite being very far away from the RNA polymerase. If the core promoter prevents optimal binding of the basal transcription machinery, promoter strength varies without affecting regulation.
[1] Heintzman ND, Ren B. The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome. Cellular and Molecular Life Science 64, 386-400 (2007).
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Functional Parameters
We characterized this promoter in Part:BBa_K203100 as a first application for its newly developed units of promoter strength in mammalian cells, [http://2009.igem.org/Team:Heidelberg/Project_Measurement Relative Expression Units (REU)]. We found it to have a strength of 0,63 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#HeLa HeLa cells], 0,58 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#MCF-7 MCF-7 cells] and 0,56 REU in [http://2009.igem.org/Team:Heidelberg/Eucaryopedia#U2-OS U2-OS cells] cells (Fig 1).
