Difference between revisions of "Part:BBa K4623013"
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The Nucleotide Silinker (NS) is a novel engineered protein that covalently links nucleic acid ends to biotinylated adapters. The sequence in FASTA format includes an added HIS tag, enabling purification of the NS protein using a nickel column. Upstream of the mSA sequence, a TrxA** (part number)** fusion tag is added to aid protein folding and reduce the formation of inclusion bodies in bacterial cells. Following protein expression, cleavage by thrombin** (part number)** exposes the mSA** (part number)** site, allowing binding to biotinylated functional proteins. The TrwC protein can covalently link specific 5' single-stranded nucleotide sequences, facilitating the conversion between nucleic acids and protein connectors.
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After introducing the pETDuet1-NS plasmid into our engineered BL21(DE3) bacteria, we conducted a small-scale trial expression and found that BL21(DE3) exhibited very low expression levels under IPTG induction (as seen in the figure below), with low cell density. Therefore, in subsequent experiments, we employed the BL21(DE3) pLysS strain, which carries the pLysS plasmid and expresses T7 lysozyme to suppress leaky expression caused by T7 RNA polymerase. However, after transformation, no visible colonies were observed. It is suspected that the NS protein may have significant toxicity to the engineered bacteria and is incompatible with the pLysS plasmid.
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===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K4623013 parameters</partinfo>
 
<partinfo>BBa_K4623013 parameters</partinfo>
 
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Revision as of 12:19, 10 October 2023


Nucleotide Silinker(NS)

Usage and Biology

The Nucleotide Silinker (NS) is a novel engineered protein that covalently links nucleic acid ends to biotinylated adapters. The sequence in FASTA format includes an added HIS tag, enabling purification of the NS protein using a nickel column. Upstream of the mSA sequence, a TrxA (BBa_K3619001) fusion tag is added to aid protein folding and reduce the formation of inclusion bodies in bacterial cells. Following protein expression, cleavage by thrombin exposes the mSA (BBa_K4623001) site, allowing binding to biotinylated functional proteins. The TrwC protein can covalently link specific 5' single-stranded nucleotide sequences, facilitating the conversion between nucleic acids and protein connectors.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1024
    Illegal PstI site found at 1342
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 1024
    Illegal PstI site found at 1342
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1024
    Illegal PstI site found at 1342
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1024
    Illegal PstI site found at 1342
    Illegal AgeI site found at 448
    Illegal AgeI site found at 508
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1147
    Illegal SapI.rc site found at 862

Cultivation, Purification and SDS-PAGE

Induction Condition