Difference between revisions of "Part:BBa K4621080"
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Fig.1 CRISPRi system used in the study | Fig.1 CRISPRi system used in the study | ||
Revision as of 11:33, 10 October 2023
CRISPRi-294
This CRISPRi fragment contains the dCas9 and sgRNA necessary for the CRISPRi system. The CRISPRi system is suitable for a variety of Streptomyces.[1] In this study, it was used to inhibit the expression of GQS52 _ 08040 gene in SCUT-3 to produce more ectoine and hydroxyectoine.
Usage and Biology
Fig.1 CRISPRi system used in the study
Due to the limited types of plasmids available for SCUT-3, we inserted the CRISPRi-294 fragment into the previously constructed plasmid by homologous recombination to achieve simultaneous stable expression of multiple target genes. Subsequently, we verified the effectiveness of the CRISPRi-294 system (Pi4 or ProPi4 in the figure below) in the fermentation of ordinary LB, high-salt LB and shrimp shells.
Fig.2 Performance test on CRISPRi strains
Fig. 3 Ectoine/hydroxyectoine production using shrimp shell waste of CRISPRi strains
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal XbaI site found at 30
Illegal SpeI site found at 4549
Illegal PstI site found at 18
Illegal PstI site found at 2443
Illegal PstI site found at 2677
Illegal PstI site found at 3889 - 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 4526
Illegal SpeI site found at 4549
Illegal PstI site found at 18
Illegal PstI site found at 2443
Illegal PstI site found at 2677
Illegal PstI site found at 3889 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 482
Illegal BglII site found at 1277
Illegal BglII site found at 4046
Illegal BamHI site found at 222
Illegal BamHI site found at 1571
Illegal BamHI site found at 4514
Illegal BamHI site found at 4719
Illegal XhoI site found at 895
Illegal XhoI site found at 3241 - 23INCOMPATIBLE WITH RFC[23]Illegal XbaI site found at 30
Illegal SpeI site found at 4549
Illegal PstI site found at 18
Illegal PstI site found at 2443
Illegal PstI site found at 2677
Illegal PstI site found at 3889 - 25INCOMPATIBLE WITH RFC[25]Illegal XbaI site found at 30
Illegal SpeI site found at 4549
Illegal PstI site found at 18
Illegal PstI site found at 2443
Illegal PstI site found at 2677
Illegal PstI site found at 3889
Illegal NgoMIV site found at 1839
Illegal NgoMIV site found at 2210
Illegal NgoMIV site found at 2413 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 3421
Illegal BsaI.rc site found at 4300
Illegal SapI site found at 813
Illegal SapI site found at 2103
Illegal SapI.rc site found at 3300