Difference between revisions of "Part:BBa K4789004"

Revision as of 03:30, 9 October 2023

Usage and Biology

We designed this part with pepper fluorescence to monitor the expression of miR-22 in cells. The “Pepper” plasmid containing the part sequence of LncRNA MALAT1 in order to reflect miRNA expression in vivo. lncRNAs can interact with miRNAs as “sponges”. And the fluorescence reflect the miRNA expression in the cervical cancer in turn. We tested the sensitivity and specificity of the vectors in Hela cells. In the future, the miRNA-LncRNA MALAT1 complex could be used to screen and detect the cervical cancer. The patients could benefit from our work. The model of the plasmid was listed below (Fig 1).

                   
                        Fig 1. The diagram of miR-22-sponge-pepper

Result

1.1 Function verification of miR-22 sensor

In order to test the ability of miR-22 sensor, we transfected miR-22-sponge-pepper and pre-miR-22 (overexpress miR-22 in cells) into Hela cells. The control group only transfected with miR-22-sponge-pepper (2 ug), the experimental group transfected with both miR-22-sponge-pepper (2 ug) and pre-miR-22 (1 ug). 48 hours later, we add 2 μm HBC fluorescent dye into per well. After incubation for 2 hours, cells were harvested and the green fluorescence was measured by plate reader (SpectraMax i3). The result showed that miR-22 could inhibit the fluorescence of Pepper in cells transfected with miR-22-sponge-pepper (Fig 2). The result suggested that miR-22 sensor can detect the alteration of miR-22 expression in cells.

               
        Fig 2. The images of Hela cells transfected with different plasmids. 
          (A) miR-22-sponge-pepper were transfected into Hela cells. 
          (B) miR-22-sponge-pepper and pre-miR-22 were transfected into Hela cells

1.2 The sensitivity of miR-22 sensor

To further test the sensitivity of miR-22-sponge-pepper (miR-22 sensor) as a monitor to detect the expression of miR-22, Hela cells were transfected with the same amount of miR-22-sponge-pepper and different amount of pre-miR-22 (0 ug, 0.5 ug, 1ug, 2ug) (Fig 3). Down-regulation of green fluorescence value was observed in cervical cancer cells transfected with different concentration of pre-miR-22 compared with control cells (Table 1). Moreover, the fluorescence was significantly decreased in a dose dependent manner (p<0.05, Fig 4). Based on the values in cell treated with different concentration of miRNA-22, the standard curve of the relationship between fluorescence and pre-miR-22 amount were made by EXCEL. The correlation coefficient (R2 value) of miRNA-22 was 0.9958. The linear fitting graph equation is y=-86524x+2E-06 (Fig 5).

            
            Fig 3.Hela cells were transfected with different miR-22 in 24-well plates.
                      
                  Table 1 The value of fluorescence of miR-22 sensor
           

           
                Fig 4. The value of green fluorescence in cells.

           
                Fig 5. The standard curve of miR-22-sponge-pepper in Hela cells

Conclusion

Besides, wo also detect the sensitivity of miR-145-sponge-pepper (https://parts.igem.org/Part:BBa_K4789005). Taken together, both miR-22-sponge-pepper and miR-145-sponge-pepper can act as “sensor” to monitor the cervical cancer progression. When it comes to the sensitivity and fluorescence intensity, miR-22 sensor is more sensitive of miR-145 as a monitor.

Reference

[1] Chen Xianjun,Zhang Dasheng,Su Ni et al. Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs.[J] .Nat Biotechnol, 2019, 37: 1287-1293.

Sequence and Features