Difference between revisions of "Part:BBa K4591002"

Revision as of 11:49, 8 October 2023

XylSmut

iGEM23_ZJUT-China's Contribution

Improvement

The xylsmut is upgraded form an existing part Xyls(BBa_K108029) from the Team iGEM_Tsinghua.It was

Usage and Biology

XylS is an archetype transcriptional activator of AraC/XylS family, mined from the TOL plasmid pWW0 of the bacterium Pseudomonas putida. It is composed of a C-terminal domain (CTD) involved in DNA binding, and an N-terminal domain required for effector binding an`d protein dimerization. [1]

XylS can bind benzoic acid and various derivatives, but it cannot recognize PA and TPA.[2-5] So the Jiawei Li and Mario Roque Huanca Nina successfully make the directed evolution of XylS to generate new TFs. Among these new TFs, Xylsmut_K32R-L224Q and Xylsmut_W88C-L224Q have showed the capacity of binding and responding to TPA and PA. Such XylS mutants could be used to construct whole-cell biosensors for fluorometric detection of PA and TPA.

When the TPA was detected by the Xylsmut, the P_m promotor would be actived and transcript the downstream fragments.[2-5,6]

Depends on this, previews researchers have construct a simple XylSmut-based fluorometric biosensors which can detect the TPA.It contains a Pm promotor, a constitutive promotor, a fluorometric protein such as the GFP, and a terminator. [7]

Fig 1. A kind of simple XylSmut-based fluorometric biosensors which can detect the TPA

In this year, we have designed a system of PET detection, attachment and degradation.In order to detect the TPA, the degradation products of the PET. The Xylsmut was chosen as the "sensor" of the TPA concentration, and the deGFP was also constructed in our circuit as the indicator of TPA.

Characterization

(The following experimental data are from the literature and modeling, not the actual data made by the experiment)

Sequence and Features