Difference between revisions of "Part:BBa K4897000"
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===What is it?=== | ===What is it?=== | ||
− | BS DNA-50 was designed by BS United China as a single-stranded DNA segment complementary to the 131 base pairs of the 16S rRNA gene of P. acne. The composition of the DNA has three categories: binding region (two ends), amplification region, and random region. The binding region is the key element of binding the P. acne 16s rRNA gene. The DNA ligase will perform the ligation of the single-strand DNA meanwhile the phi29 will generate double-stranded DNA through amplification primers | + | BS DNA-50 was designed by BS United China as a single-stranded DNA segment complementary to the 131 base pairs of the 16S rRNA gene of P. acne. The composition of the DNA has three categories: binding region (two ends), amplification region, and random region. The binding region is the key element of binding the P. acne 16s rRNA gene [1]. The DNA ligase will perform the ligation of the single-strand DNA meanwhile the phi29 will generate double-stranded DNA through amplification primers |
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===Usage and Biology=== | ===Usage and Biology=== | ||
<html> | <html> | ||
− | <img src="https://static.igem.wiki/teams/4897/wiki/parts/l-rca-mechanism.png | + | <table width="100%" border="10" cellspacing="0" cellpadding="0"> |
− | < | + | <tr> |
− | + | <td align="center"><img src="https://static.igem.wiki/teams/4897/wiki/parts/l-rca-mechanism.png" width="900" height="auto" /> </td> | |
+ | </tr> | ||
+ | <tr> | ||
+ | <td align="center">Fig. 1. The process of BS DNA binding to P. acne DNA.</td> | ||
+ | </tr> | ||
+ | </table> | ||
</html> | </html> | ||
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Overall, theoretically, through ligation and rolling circle amplification (L-RCA), BS DNA-50 should have high selectivity for detecting the 16S rRNA gene of P. acne. | Overall, theoretically, through ligation and rolling circle amplification (L-RCA), BS DNA-50 should have high selectivity for detecting the 16S rRNA gene of P. acne. | ||
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<partinfo>BBa_K4897000 parameters</partinfo> | <partinfo>BBa_K4897000 parameters</partinfo> | ||
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+ | ===Reference=== | ||
+ | [1]Nakamura, M., Kametani, I., Higaki, S., & Yamagishi, T. (2003). Identification of Propionibacterium acnes by polymerase chain reaction for amplification of 16S ribosomal RNA and lipase genes. Anaerobe, 9(1), 5–10. https://doi.org/10.1016/s1075-9964(03)00061-1. |
Latest revision as of 10:10, 8 October 2023
BS DNA-50 (BS DNA 1.0) using in L-RCA for detecting P. acne
What is it?
BS DNA-50 was designed by BS United China as a single-stranded DNA segment complementary to the 131 base pairs of the 16S rRNA gene of P. acne. The composition of the DNA has three categories: binding region (two ends), amplification region, and random region. The binding region is the key element of binding the P. acne 16s rRNA gene [1]. The DNA ligase will perform the ligation of the single-strand DNA meanwhile the phi29 will generate double-stranded DNA through amplification primers
Usage and Biology
Fig. 1. The process of BS DNA binding to P. acne DNA. |
Overall, theoretically, through ligation and rolling circle amplification (L-RCA), BS DNA-50 should have high selectivity for detecting the 16S rRNA gene of P. acne.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal SpeI site found at 27
- 12INCOMPATIBLE WITH RFC[12]Illegal SpeI site found at 27
- 21COMPATIBLE WITH RFC[21]
- 23INCOMPATIBLE WITH RFC[23]Illegal SpeI site found at 27
- 25INCOMPATIBLE WITH RFC[25]Illegal SpeI site found at 27
- 1000COMPATIBLE WITH RFC[1000]
Reference
[1]Nakamura, M., Kametani, I., Higaki, S., & Yamagishi, T. (2003). Identification of Propionibacterium acnes by polymerase chain reaction for amplification of 16S ribosomal RNA and lipase genes. Anaerobe, 9(1), 5–10. https://doi.org/10.1016/s1075-9964(03)00061-1.