Difference between revisions of "Part:BBa K4621151"
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chi18B hypothetical promoter is a functional fragment in chitinase Chi18B gene, which was cloned from SCUT-3 gene. In our project, through transcriptome analysis, qPCR and other means, we found that the gene expression of chitinase Chi18B was up-regulated when SCUT-3 was in chitin medium, and we speculated that its promoter chi18B hypothetical promoter may have properties that can be induced by chitin. | chi18B hypothetical promoter is a functional fragment in chitinase Chi18B gene, which was cloned from SCUT-3 gene. In our project, through transcriptome analysis, qPCR and other means, we found that the gene expression of chitinase Chi18B was up-regulated when SCUT-3 was in chitin medium, and we speculated that its promoter chi18B hypothetical promoter may have properties that can be induced by chitin. | ||
− | ===Testing and validation=== | + | ===Testing and validation=== |
+ | |||
We ligated the chi18B hypothetical promoter with EctOperon and overexpressed it in Streptomyces SCUT-3 using an integrated plasmid. The modified strain was inoculated in 40 mL LB medium and fermented at 40℃ and 220 rpm for 120h. The production of Ectoine and 5-Hydroxyectoin in the presence or without chitin (the first day of fermentation) was detected to evaluate the chitin inducability of the promoter. The results are shown in FIG. 1. | We ligated the chi18B hypothetical promoter with EctOperon and overexpressed it in Streptomyces SCUT-3 using an integrated plasmid. The modified strain was inoculated in 40 mL LB medium and fermented at 40℃ and 220 rpm for 120h. The production of Ectoine and 5-Hydroxyectoin in the presence or without chitin (the first day of fermentation) was detected to evaluate the chitin inducability of the promoter. The results are shown in FIG. 1. | ||
https://static.igem.wiki/teams/4621/wiki/parts/effect-of-different-promoters-on-yield.png | https://static.igem.wiki/teams/4621/wiki/parts/effect-of-different-promoters-on-yield.png |
Revision as of 17:45, 5 October 2023
It consists of the chi18B hypothetical promoter and EctOperon.
Usage, Biology and Characterization
EctOperon contains ectA, ectB, ectC and ectD and can produce 5-Hydroxyectoine from lysine.
chi18B hypothetical promoter is a functional fragment in chitinase Chi18B gene, which was cloned from SCUT-3 gene. In our project, through transcriptome analysis, qPCR and other means, we found that the gene expression of chitinase Chi18B was up-regulated when SCUT-3 was in chitin medium, and we speculated that its promoter chi18B hypothetical promoter may have properties that can be induced by chitin.
Testing and validation
We ligated the chi18B hypothetical promoter with EctOperon and overexpressed it in Streptomyces SCUT-3 using an integrated plasmid. The modified strain was inoculated in 40 mL LB medium and fermented at 40℃ and 220 rpm for 120h. The production of Ectoine and 5-Hydroxyectoin in the presence or without chitin (the first day of fermentation) was detected to evaluate the chitin inducability of the promoter. The results are shown in FIG. 1.
Fig.1 Fermentation of products with or without the addition of an inducer(chitin) (a).Ectoine (b).5-Hydroxyectoin(72h)
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 3567
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 3567
Illegal NotI site found at 911
Illegal NotI site found at 1796
Illegal NotI site found at 2114 - 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 1093
Illegal XhoI site found at 1267 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 3567
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 3567
Illegal NgoMIV site found at 1128
Illegal NgoMIV site found at 1534
Illegal NgoMIV site found at 1540
Illegal NgoMIV site found at 1831
Illegal NgoMIV site found at 2880
Illegal NgoMIV site found at 3072
Illegal NgoMIV site found at 3582 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 716
Illegal BsaI.rc site found at 896
Illegal BsaI.rc site found at 1678
Illegal BsaI.rc site found at 2206
Illegal BsaI.rc site found at 2461
Illegal BsaI.rc site found at 2551
Illegal BsaI.rc site found at 2626
Illegal SapI site found at 754