Difference between revisions of "Part:BBa K4275036"
 
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===Usage and Biology===
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==Usage and Biology==
  
 
<i>Kluyveromyces marxianus</i> mating factor alpha fused with NpaBGS would lead the polypeptide of NpaBGS-t through ER and Golgi apparatus and be secreted. NpaBGS is a β-glucosidase containing two glycosyl hydrolase Family 3 domains at N and C terminals .It was discovered from the buffalo rumen fungus <i>Neocallimastix patriciarum</i> W5. It’s activity could be enhanced at 50°C by adding Mg2+ or Mn2+ ions.
 
<i>Kluyveromyces marxianus</i> mating factor alpha fused with NpaBGS would lead the polypeptide of NpaBGS-t through ER and Golgi apparatus and be secreted. NpaBGS is a β-glucosidase containing two glycosyl hydrolase Family 3 domains at N and C terminals .It was discovered from the buffalo rumen fungus <i>Neocallimastix patriciarum</i> W5. It’s activity could be enhanced at 50°C by adding Mg2+ or Mn2+ ions.
  
  
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===Characterization===
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==Characterization==
  
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<b>Cellulases and cellulase boosters expression</b>
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<h3>Cellulases and cellulase boosters expression</h3>
  
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The enzymatic digestion of the polysaccharide chains of cellulose was completed by exoglucanase, endoglucanase and 1-4 betaglucosidase, and this series of reactions are catalysed by LPMO and CDH. We constructed expression vectors for yeast Kluyveromyces marxianus with the unique origin of replication and antibiotic selection marker for the culturing of Kluyveromyces marxianus. Expression vectors were made distinct by the insertion of different sequences coding for the ligated form of the cellulase enzymes, LPMO and CDH. The enzymes were ligated with an alpha-mating factor secretion signal for Kluyveromyces marxianus at the N-terminus and a type I dockerin domain at the C-terminus (Fig.2A).The successful production and secretion of the protein NpaBGS, MtCDH and TrEGIII are examined by SDS-PAGE and western blot analysis (Fig.2D).
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The enzymatic digestion of the polysaccharide chains of cellulose was completed by exoglucanase, endoglucanase and 1-4 betaglucosidase, and this series of reactions are catalysed by LPMO and CDH. We constructed expression vectors for yeast <i>Kluyveromyces marxianus</i> with the unique origin of replication and antibiotic selection marker for the culturing of <i>Kluyveromyces marxianus</i>. Expression vectors were made distinct by the insertion of different sequences coding for the ligated form of the cellulase enzymes, LPMO and CDH. The enzymes were ligated with an alpha-mating factor secretion signal for <i>Kluyveromyces marxianus</i> at the N-terminus and a type I dockerin domain at the C-terminus (Fig.1A).The successful production and secretion of the protein NpaBGS, MtCDH and TrEGIII are examined by SDS-PAGE and western blot analysis (Fig.1D).
  
  
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[[Image:GreatBay SCIE--Part Fig8.png|thumbnail|750px|center|'''Figure 2:'''  
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[[Image:GreatBay SCIE--Part Fig8.png|thumbnail|750px|center|'''Figure 1:'''  
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Fig.2 Construction of expression vectors for fusion proteins production in yeast Kluyveromyces marxianus and the analysis of the secreted enzymes (A) The design of our expression vector for production of cellulases and cellulase boosters in Kluyveromyces marxianus; the coding sequences for the cellulases and cellulase boosters were ligated with an alpha-mating factor secretion signal for Kluyveromyces marxianus at the N terminus and a type I dockerin domain at the C terminus linked by a flexible linker (B) The growth curve of recombinant yeasts transformed with expression plasmids coding for different enzymes (C) The agarose gel electrophoresis image of coding sequences for different enzymes, respectively NpaBGS, TaLPMO, CBHII, MtCDH and TrEGIII (D) Western blot result for TrEGIII and MtCDH. ]]
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Fig.1 Construction of expression vectors for fusion proteins production in yeast <i>Kluyveromyces marxianus</i> and the analysis of the secreted enzymes (A) The design of our expression vector for production of cellulases and cellulase boosters in <i>Kluyveromyces marxianus</i>; the coding sequences for the cellulases and cellulase boosters were ligated with an alpha-mating factor secretion signal for <i>Kluyveromyces marxianus</i> at the N terminus and a type I dockerin domain at the C terminus linked by a flexible linker (B) The growth curve of recombinant yeasts transformed with expression plasmids coding for different enzymes (C) The agarose gel electrophoresis image of coding sequences for different enzymes, respectively NpaBGS, TaLPMO, CBHII, MtCDH and TrEGIII (D) Western blot result for TrEGIII and MtCDH. ]]
  
  
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<b>Cellulosome construction</b>
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<h3>Cellulosome construction</h3>
  
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We assembled the cellulose-like complex on the surface of E.coli by adding primary scaffold proteins, cellulases and cellulase boosters onto E.coli expressing secondary scaffold proteins. The mixture was centrifuged and resuspended in tris-HCl. The mixture underwent centrifugation and resuspension using tris-HCl, and cellulose was added to the mixture.
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We assembled the cellulose-like complex on the surface of <i>E.coli</i> by adding primary scaffold proteins, cellulases and cellulase boosters onto <i>E.coli</i> expressing secondary scaffold proteins. The mixture was centrifuged and resuspended in tris-HCl. The mixture underwent centrifugation and resuspension using tris-HCl, and cellulose was added to the mixture.
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After 24h, the mixture was filtered and tested for glucose by Benedict's test. From the result, we determined that the cellulosome-like complexes are able to degrade cellulose at a higher efficiency than cell-free cellulases mixture (Fig.3A and 3B).
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After 24h, the mixture was filtered and tested for glucose by Benedict's test. From the result, we determined that the cellulosome-like complexes are able to degrade cellulose at a higher efficiency than cell-free cellulases mixture (Fig.2A and 2B).
 
The overall success in engineering our project was verified by the successful construction of cellulosome complex and degrading cellulose to reducing sugars.
 
The overall success in engineering our project was verified by the successful construction of cellulosome complex and degrading cellulose to reducing sugars.
  
  
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[[Image:GreatBay SCIE--Part Fig9.png|thumbnail|750px|center|'''Figure 3:'''  
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[[Image:GreatBay SCIE--Part Fig9.png|thumbnail|750px|center|'''Figure 2:'''  
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Fig.3 The Benedict’s quantitative and qualitative tests for reducing sugar produced by the enzymatic or cellulosomal degradation of cellulose (A) Benedict’s qualitative test result for reducing sugar production through 24h of cellulose degradation by cellulosome, cellulosome without boosters, nanobody presenting cell+free cellulases+cellulase boosters, nanobody presenting cell+cellulases and nanobody presenting cell control from left to right (B) Benedict’s quantitative test for absorbance of the samples obtained from the Benedict’s qualitative test at 635 nm wavelength. ]]
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Fig.2 The Benedict’s quantitative and qualitative tests for reducing sugar produced by the enzymatic or cellulosomal degradation of cellulose (A) Benedict’s qualitative test result for reducing sugar production through 24h of cellulose degradation by cellulosome, cellulosome without boosters, nanobody presenting cell+free cellulases+cellulase boosters, nanobody presenting cell+cellulases and nanobody presenting cell control from left to right (B) Benedict’s quantitative test for absorbance of the samples obtained from the Benedict’s qualitative test at 635 nm wavelength. ]]
  
  
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===Sequence and Features===
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==Sequence and Features==
  
 
<partinfo>BBa_K4275036 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K4275036 SequenceAndFeatures</partinfo>
  
  
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===References===
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==References==
  
 
1. Rajkumar, Arun S. et al. "Biological Parts For Kluyveromyces Marxianus Synthetic Biology". Frontiers In Bioengineering And Biotechnology, vol 7, 2019. Frontiers Media SA, https://doi.org/10.3389/fbioe.2019.00097.<br>
 
1. Rajkumar, Arun S. et al. "Biological Parts For Kluyveromyces Marxianus Synthetic Biology". Frontiers In Bioengineering And Biotechnology, vol 7, 2019. Frontiers Media SA, https://doi.org/10.3389/fbioe.2019.00097.<br>

Latest revision as of 12:36, 13 October 2022


pLAC4-KmarxMFα-NpaBGS-t-tTDH1

The composite part contains a pLac4 promoter[1], Kluyveromyces marxianus mating factor alpha[2], beta-glucosidase NpaBGS fused with type I dockerin[3] and tTDH1 terminator[4]. NpaBGS is a cellulase active on oligosaccharides(short polysaccharides) and cellobiose(disaccharide) that cleaves glycosidic bonds. The Kluyveromyces marxianus mating factor alpha is fused in order to enable secretion of NpaBGS by host K.marxianus.


Usage and Biology

Kluyveromyces marxianus mating factor alpha fused with NpaBGS would lead the polypeptide of NpaBGS-t through ER and Golgi apparatus and be secreted. NpaBGS is a β-glucosidase containing two glycosyl hydrolase Family 3 domains at N and C terminals .It was discovered from the buffalo rumen fungus Neocallimastix patriciarum W5. It’s activity could be enhanced at 50°C by adding Mg2+ or Mn2+ ions.


Characterization

Cellulases and cellulase boosters expression

The enzymatic digestion of the polysaccharide chains of cellulose was completed by exoglucanase, endoglucanase and 1-4 betaglucosidase, and this series of reactions are catalysed by LPMO and CDH. We constructed expression vectors for yeast Kluyveromyces marxianus with the unique origin of replication and antibiotic selection marker for the culturing of Kluyveromyces marxianus. Expression vectors were made distinct by the insertion of different sequences coding for the ligated form of the cellulase enzymes, LPMO and CDH. The enzymes were ligated with an alpha-mating factor secretion signal for Kluyveromyces marxianus at the N-terminus and a type I dockerin domain at the C-terminus (Fig.1A).The successful production and secretion of the protein NpaBGS, MtCDH and TrEGIII are examined by SDS-PAGE and western blot analysis (Fig.1D).


Figure 1: Fig.1 Construction of expression vectors for fusion proteins production in yeast Kluyveromyces marxianus and the analysis of the secreted enzymes (A) The design of our expression vector for production of cellulases and cellulase boosters in Kluyveromyces marxianus; the coding sequences for the cellulases and cellulase boosters were ligated with an alpha-mating factor secretion signal for Kluyveromyces marxianus at the N terminus and a type I dockerin domain at the C terminus linked by a flexible linker (B) The growth curve of recombinant yeasts transformed with expression plasmids coding for different enzymes (C) The agarose gel electrophoresis image of coding sequences for different enzymes, respectively NpaBGS, TaLPMO, CBHII, MtCDH and TrEGIII (D) Western blot result for TrEGIII and MtCDH.


Cellulosome construction

We assembled the cellulose-like complex on the surface of E.coli by adding primary scaffold proteins, cellulases and cellulase boosters onto E.coli expressing secondary scaffold proteins. The mixture was centrifuged and resuspended in tris-HCl. The mixture underwent centrifugation and resuspension using tris-HCl, and cellulose was added to the mixture. After 24h, the mixture was filtered and tested for glucose by Benedict's test. From the result, we determined that the cellulosome-like complexes are able to degrade cellulose at a higher efficiency than cell-free cellulases mixture (Fig.2A and 2B). The overall success in engineering our project was verified by the successful construction of cellulosome complex and degrading cellulose to reducing sugars.


Figure 2: Fig.2 The Benedict’s quantitative and qualitative tests for reducing sugar produced by the enzymatic or cellulosomal degradation of cellulose (A) Benedict’s qualitative test result for reducing sugar production through 24h of cellulose degradation by cellulosome, cellulosome without boosters, nanobody presenting cell+free cellulases+cellulase boosters, nanobody presenting cell+cellulases and nanobody presenting cell control from left to right (B) Benedict’s quantitative test for absorbance of the samples obtained from the Benedict’s qualitative test at 635 nm wavelength.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 331
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 331
    Illegal NheI site found at 89
    Illegal NheI site found at 1783
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 331
    Illegal XhoI site found at 1252
    Illegal XhoI site found at 2858
    Illegal XhoI site found at 3937
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 331
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 331
    Illegal NgoMIV site found at 2355
    Illegal AgeI site found at 1369
    Illegal AgeI site found at 1387
  • 1000
    COMPATIBLE WITH RFC[1000]


References

1. Rajkumar, Arun S. et al. "Biological Parts For Kluyveromyces Marxianus Synthetic Biology". Frontiers In Bioengineering And Biotechnology, vol 7, 2019. Frontiers Media SA, https://doi.org/10.3389/fbioe.2019.00097.
2.“Mating Factor Alpha-1 [Kluyveromyces Marxianus] - Protein - NCBI.” National Center for Biotechnology Information, U.S. National Library of Medicine, https://www.ncbi.nlm.nih.gov/protein/QGN17207.1
3. Chen, Hsin-Liang et al. "A Highly Efficient Β-Glucosidase From The Buffalo Rumen Fungus Neocallimastix Patriciarum W5". Biotechnology For Biofuels, vol 5, no. 1, 2012. Springer Science And Business Media LLC, https://doi.org/10.1186/1754-6834-5-24.
4. "Part:Bba K2753052 - Parts.Igem.Org". Parts.Igem.Org, 2022, https://parts.igem.org/Part:BBa_K2753052.