Difference between revisions of "Part:BBa K4169016:Design"

 
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===Design Notes===
 
===Design Notes===
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Codon optimization.
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GenScript synthesised tmd plasmids and performed codon optimization.
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<p>We added His tag on the end of tmd sequence.
  
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===Source===
  
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The gene sequence of dmd is from The European Nucleotide Archive (ENA). Sequence: X89575.1
  
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===Source===
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The link is here: https://www.ebi.ac.uk/ena/browser/view/X89575
  
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It comes from https://www.ebi.ac.uk/ena/browser/view/X89575 Coding: CDX46666.1.
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And dmd gene is originally in Hyphomicrobium sp.
  
 
===References===
 
===References===
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[1] Yang C C, Packman L C, Scrutton N S. The primary structure of Hyphomicrobium X dimethylamine dehydrogenase: relationship to trimethylamine dehydrogenase and implications for substrate recognition[J]. European journal of biochemistry, 1995, 232(1): 264-271.
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[2] Scrutton N S, Sutcliffe M J. Trimethylamine dehydrogenase and electron transferring flavoprotein[J]. Enzyme-Catalyzed Electron and Radical Transfer, 2000: 145-181.

Latest revision as of 13:26, 12 October 2022


produce DMADH


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 897
    Illegal AgeI site found at 1291
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

GenScript synthesised tmd plasmids and performed codon optimization.

We added His tag on the end of tmd sequence.

Source

The gene sequence of dmd is from The European Nucleotide Archive (ENA). Sequence: X89575.1

The link is here: https://www.ebi.ac.uk/ena/browser/view/X89575

And dmd gene is originally in Hyphomicrobium sp.

References

[1] Yang C C, Packman L C, Scrutton N S. The primary structure of Hyphomicrobium X dimethylamine dehydrogenase: relationship to trimethylamine dehydrogenase and implications for substrate recognition[J]. European journal of biochemistry, 1995, 232(1): 264-271.

[2] Scrutton N S, Sutcliffe M J. Trimethylamine dehydrogenase and electron transferring flavoprotein[J]. Enzyme-Catalyzed Electron and Radical Transfer, 2000: 145-181.