Difference between revisions of "Part:BBa K4438806"
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<partinfo>BBa_K4438806 short</partinfo> | <partinfo>BBa_K4438806 short</partinfo> | ||
| − | MN4_Target_3(BBa_K4438806) is a single-stranded DNA sequence having 82 nucleotides. Figure 1C) shows the secondary structure and minimum free energy. The 5’ end has few bases complementary to MN4_trigger_3_phi29(BBa_K4438805), the middle region has ssDNA sense T7 promoter sequence and the 5’ end has ssDNA sense broccoli sequence. | + | MN4_Target_3(<partinfo>BBa_K4438806</partinfo>) is a single-stranded DNA sequence having 82 nucleotides. Figure 1C) shows the secondary structure and minimum free energy. The 5’ end has few bases complementary to MN4_trigger_3_phi29(<partinfo>BBa_K4438805</partinfo>), the middle region has ssDNA sense T7 promoter sequence and the 5’ end has ssDNA sense broccoli sequence. |
===Usage and Biology=== | ===Usage and Biology=== | ||
| − | This part along with MN4_trigger_3_phi29(BBa_K4438805) and Aptamer_MN4(BBa_K4438800) can be used to detect different concentrations of quinine [1]. | + | This part along with MN4_trigger_3_phi29(<partinfo>BBa_K4438805</partinfo>) and Aptamer_MN4(<partinfo>BBa_K4438800</partinfo>) can be used to detect different concentrations of quinine [1]. |
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| + | [[File:T--IISER-Tirupati_India--mn4structure3.png]] | ||
Latest revision as of 12:59, 12 October 2022
MN4_Target_3
MN4_Target_3(BBa_K4438806) is a single-stranded DNA sequence having 82 nucleotides. Figure 1C) shows the secondary structure and minimum free energy. The 5’ end has few bases complementary to MN4_trigger_3_phi29(BBa_K4438805), the middle region has ssDNA sense T7 promoter sequence and the 5’ end has ssDNA sense broccoli sequence.
Usage and Biology
This part along with MN4_trigger_3_phi29(BBa_K4438805) and Aptamer_MN4(BBa_K4438800) can be used to detect different concentrations of quinine [1].
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Unknown
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
Reinstein, O., Yoo, M., Han, C., Palmo, T., Beckham, S. A., Wilce, M. C., & Johnson, P. E. (2013). Quinine binding by the cocaine-binding aptamer. Thermodynamic and hydrodynamic analysis of high-affinity binding of an off-target ligand. Biochemistry, 52(48), 8652-8662.