Difference between revisions of "Part:BBa K4417001"
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<h1>Description</h1> | <h1>Description</h1> | ||
− | This primer is designed for mutating the | + | This primer is designed for mutating the ''Bsa''I site 1 in pCT5-''bac'' 2.0. This part is a forward primer with a mutation nucleotide, changing c to g. |
− | [[File:Zjy11.png|350px|thumb|center|'''Figure 1:''' pCT5-bac 2.0 with primers for site directed mutagenesis at position 647.]] | + | [[File:Zjy11.png|350px|thumb|center|'''Figure 1:''' pCT5-''bac'' 2.0 with primers for site directed mutagenesis at position 647.]] |
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* GC content: 62% | * GC content: 62% | ||
− | [[File:Zjy12.png| | + | [[File:Zjy12.png|700px|thumb|center|'''Figure 2:''' Binding site of SDM1_Fw.]] |
<h1>Method</h1> | <h1>Method</h1> | ||
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This primer will remove one BsaI site, leaving another two BsaI sites. The KLD product was transformed into DH5-α, and the plasmid was checked using a diagnostic digest. From Figure 3, the expected band size can be identified in lanes 2, 7, 11, and 15. | This primer will remove one BsaI site, leaving another two BsaI sites. The KLD product was transformed into DH5-α, and the plasmid was checked using a diagnostic digest. From Figure 3, the expected band size can be identified in lanes 2, 7, 11, and 15. | ||
− | [[File:Zjy13.png| | + | [[File:Zjy13.png|700px|thumb|center|'''Figure 3:''' Comparative gel for pCT5c site directed mutagenesis; 1: HyperLadder<sup>TM</sup> 1kb, 2: pCT5-bac 2.0 uncut, 3: SDM1 uncut, 4: SDM1,3 uncut, 5: pCT5c uncut, 6: pCT5c cut with BsaI (3481bp, 2344bp, 2052bp), 7: SDM1 cut with BsaI (4396bp, 3481bp), 8: SDM1,3 cut with BsaI (7877bp), 9: pCT5c cut with BsaI, 10: pCT5-bac 2.0 cut with BamHI/SacI (6851bp, 1026bp), 11: SDM1 cut with BamHI/SacI (6851bp, 1026bp), 12: SDM1,3 cut with BamHI/SacI (6851bp, 1026bp), 13: pCT5c cut with BamHI/SacI (6851bp, 1026bp), 14: pCT5-bac 2.0 cut with BamHI/BsaI (3481bp, 2087bp, 2052bp, 257bp), 15: SDM1 cut with BamHI/BsaI (3481bp, 2309bp, 2087bp), 16: SDM1,3 cut with BamHI/BsaI (5790bp, 2087bp), 17: pCT5c cut with BamHI/BsaI, 18: HyperLadder<sup>TM</sup> 1kb.]] |
+ | |||
+ | <h1>Conclusion</h1> | ||
+ | |||
+ | This part has high efficiency and quality in site directed mutagenesis. | ||
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Latest revision as of 09:38, 12 October 2022
SDM1 Forward Primer for pCT5c Mutation
Description
This primer is designed for mutating the BsaI site 1 in pCT5-bac 2.0. This part is a forward primer with a mutation nucleotide, changing c to g.
Usage and Biology
- This part is used in site directed mutagenesis of pCT5c (Part: BBa_K4417000).
- Sequence: tgccctgggtttccattgcgc
- Length: 21-mer
- Tm: 61℃
- GC content: 62%
Method
This part is used with BBa_K4417000 and BBa_K4417002. A detailed protocol is described in BBa_K4417000.
Characterization
This primer will remove one BsaI site, leaving another two BsaI sites. The KLD product was transformed into DH5-α, and the plasmid was checked using a diagnostic digest. From Figure 3, the expected band size can be identified in lanes 2, 7, 11, and 15.
Conclusion
This part has high efficiency and quality in site directed mutagenesis.
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]