Difference between revisions of "Part:BBa K4390031"
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L2NC is a silica tag, attach this to a protein to immobilise on silica beads. | L2NC is a silica tag, attach this to a protein to immobilise on silica beads. | ||
| − | + | ==Usage and Biology== | |
| − | === | + | L2NC is a 130 amino acids peptide, a truncated version of the L2 ribosomal protein from E. coli (N-terminal 1-60 and C-terminal 203-273 amino acids of L2), which can fuse to N-terminal of a functional enzyme using JUMP assembly. This tag contains just the N and C-terminal regions of L2 which were shown to have silica binding capacity, allowing the use of a smaller tag without compromising on binding affinity. From literature, the dissociation constant between L2NC silica tag and silica beads is 1.7nM. Therefore, this tag facilitates immobilisation to silica surfaces, enabling enzyme immobilisation or purification using silica-based spin columns (Kim et al., 2020). |
| + | The N-terminal L2NC silica tag is inspired by 2021 Edinburgh OG teams (BBa_K3946002). | ||
| + | |||
| + | ==Design== | ||
| + | Inspired by iGEM 2021 Edinburgh OG, we design the L2NC silica tag which is suitable for the N-terminal tagging based on BioBrick and JUMP assembly. | ||
| + | |||
| + | ==Characterization== | ||
| + | We tried to move the L2NC DNA fragment from plasmid containing C-terminal-L2NC sequence to new plasmids as N-terminal-L2NC. However, we failed to characterize this part since the primers designed by us can’t amplify the DNA from C-terminal-L2NC silica tag. | ||
| + | |||
| + | [[File:PCR_L2NC.png|200px|center|frameless|link=]] | ||
| + | ''Figure 1. Agarose gel shows the PCR result of L2NC silica tag (agarose concentration 1.2%). The left lane was loaded with L2NC PCR product. The ladder used on the right lane was: 1 kb DNA Ladder from NEB (N3232S)'' | ||
| + | |||
<!-- --> | <!-- --> | ||
| − | <span class='h3bb'>Sequence and Features</span> | + | ==<span class='h3bb'>Sequence and Features</span>== |
<partinfo>BBa_K4390031 SequenceAndFeatures</partinfo> | <partinfo>BBa_K4390031 SequenceAndFeatures</partinfo> | ||
| + | ==Reference== | ||
| + | Kim S, Joo K Il, Jo BH, Cha HJ. Stability-Controllable Self-Immobilization of Carbonic Anhydrase Fused with a Silica-Binding Tag onto Diatom Biosilica for Enzymatic CO2 Capture and Utilization. ACS Appl Mater Interfaces. 2020 Jun 17;12(24):27055–63. | ||
<!-- Uncomment this to enable Functional Parameter display | <!-- Uncomment this to enable Functional Parameter display | ||
Revision as of 08:09, 12 October 2022
L2NC Silica Tag (N-terminal)
L2NC is a silica tag, attach this to a protein to immobilise on silica beads.
Usage and Biology
L2NC is a 130 amino acids peptide, a truncated version of the L2 ribosomal protein from E. coli (N-terminal 1-60 and C-terminal 203-273 amino acids of L2), which can fuse to N-terminal of a functional enzyme using JUMP assembly. This tag contains just the N and C-terminal regions of L2 which were shown to have silica binding capacity, allowing the use of a smaller tag without compromising on binding affinity. From literature, the dissociation constant between L2NC silica tag and silica beads is 1.7nM. Therefore, this tag facilitates immobilisation to silica surfaces, enabling enzyme immobilisation or purification using silica-based spin columns (Kim et al., 2020). The N-terminal L2NC silica tag is inspired by 2021 Edinburgh OG teams (BBa_K3946002).
Design
Inspired by iGEM 2021 Edinburgh OG, we design the L2NC silica tag which is suitable for the N-terminal tagging based on BioBrick and JUMP assembly.
Characterization
We tried to move the L2NC DNA fragment from plasmid containing C-terminal-L2NC sequence to new plasmids as N-terminal-L2NC. However, we failed to characterize this part since the primers designed by us can’t amplify the DNA from C-terminal-L2NC silica tag.
Figure 1. Agarose gel shows the PCR result of L2NC silica tag (agarose concentration 1.2%). The left lane was loaded with L2NC PCR product. The ladder used on the right lane was: 1 kb DNA Ladder from NEB (N3232S)
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 38
- 1000COMPATIBLE WITH RFC[1000]
Reference
Kim S, Joo K Il, Jo BH, Cha HJ. Stability-Controllable Self-Immobilization of Carbonic Anhydrase Fused with a Silica-Binding Tag onto Diatom Biosilica for Enzymatic CO2 Capture and Utilization. ACS Appl Mater Interfaces. 2020 Jun 17;12(24):27055–63.